Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_3425 |
Symbol | |
ID | 6411099 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 3666017 |
End bp | 3668344 |
Gene Length | 2328 bp |
Protein Length | 775 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642713305 |
Product | GAF sensor signal transduction histidine kinase |
Protein accession | YP_001992402 |
Protein GI | 192291797 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0531418 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCTCGC GATCAGACCC CGGCCAGCCC ATGGCATCCG CGACCGACCC GAGCGGCCGA CTGGCGCTCG ATCTGACCGA ATGCGACCGT GAGCCGATCC ACATTCCCGG CGCGATCCAG CCGCACGGCT ATCTGTTCGT GGTGAGCGAG ACCGATCTAC GGATCGCCTC AGTCAGCGCC AATGTGGAGG ATCTGCTGAG GCAGCCCCCT GCTTCGCTGC TGAATGTGCC GATCGCGCAT TACCTCACGG CTGCCAGTGC CGCACGCCTG ACCCACGCGC TTCACGGCGG CGACCCGGCC GCTATCAATC CAATCCGGCT CGACGTGGTC ACACCGGACG GGGAGCGCGC ATTCAACGGG ATTCTGCACC GCCACGACTC GATCGTCATT CTCGAATTGG AGCCGCGTGA CGAGTCGCGC TACACAAACG AGTTCTTCCG CAGCGTCCGC GTCGCGATCC GCCGCCTGCA GACGGCAGCC GATTTGCCGA CCGCCTGCTG GATCGCGGCG AGCGAAGTCC GCCGCATCAC TGGCTTCGAC CGGATCAAGG TGTACCAGTT TGCCGCCGAT TGGAGCGGTC AGGTGATCGC CGAAGACCGC GACAGCGGAA TCCCGTCCCT GCTCGATTTT CACTTCCCAT CGTCCGACAT ACCGGCTCAA TCCCGCGCGC TGTACACTAT CAACCCCGTT CGCATCATAC CGGACATCGG ATATCGCCCC TCGCCGCTGG TGCCCGACAT CAATCCGCGA CTTGGCGGCC CAATCGATCT CAGCTTCTCG GTGCTGCGCA GCGTGTCGCC GACCCATCTT GAGTACATGG TCAACATGGG CATGCACGCG GCGATGTCGA TTTCAATCGT CCGCGACAAT CGCCTGTGGG GCATGATCTC CTGTCACAAT CTGACGCCGC GCTTCGTTTC CTACGAAGTC CGGCAGGCAT GCGAGCTGAT CGCCCAGGTG CTGACATGGC AGATCGGAGT GCTGGAAGAA GCCGAGATCG TCCGCCACAG CGTTCGCATG CGCGCTATAC AGAACCGGCT GCTGCACGAG CTTGGAGACG AGCAAGGCCT CACGGCCGGC CTGAGCCGCG TCAGCGAAGA GATGCTGGCA TTGATGGGTG CATCCGGCTT CGCGCTGTGC AGCTTCGACG GCGTCGCCGC TTTCGGCCGA ACACCATCCG ATGACGAAAT CCAGGCGCTG GCGTCGTGGC TGTCTCACCG TGAGTCACGC GGTATCTTTC AGACCCAGCA GCTCTCGGCC AGCTTCCCCG AGGCCGAAGT GTACTCGGAC ATCGCGAGCG GACTGCTCGC CGTGCCGCTG GGGCGGGCGT CGACCACGCT GATGCTGTGG TTTCGACCGG AGGTGGCGCA GACCGTCACT TGGGGCGGCG ACCCGCACAA GCCGGTGCAG ATCGGCCCCC GCGGCAGGCG GCTGCAGACC CGTGCTTCGT TCGAGGCTTG GCGCGAAGAA GTCCGCGACC GATCTCGCCC ATGGCGCAGC CACGAAATTG TCGCGGCGGA GGAGATCCGC GATCTCGTGG TCGATGTCAT TCTCGGCCGC GCCGAGGAAC TGGAGAATGC CAACCGCGAG CTGTCGCGCA GCAACGACGA ACTGGAGTCG TTCGCCTATG TGGCGGCCCA CGATCTCAAG GAGCCGCTGC GCCACATCGA GGCGTTCGCC GGACTGTTGA ACGATCTGCT GCTACCGGAG GCGCGAAGCC GACTGAGCCT AATGGTGAAC GGCATCGAGG CATCGTCGCG CCGGCTGCGC GCGCTGATCA ATGATCTTGC CGAGTACTCC AGGATCGGGC GGCAGGCCCG GCCGCTGCAG CCGGTCGACC TCAATCAGAT TCTGACCGAG GTGCTGTCCG ATCTGAAGCC GATGCTGCAG GATGCACGCG CCGAGGTCGT CTCGGAGCCC CTTCCCACCG TGCTGTGCGA CGGCAGCCAG ATTCGGCAAT TGCTGCAGAA CCTGATCAGC AATGCGGTGA AGTATCGCGA TGCCGAGCGG CTGCCTCACG TGACCATCGC GGCGACGATC GACAGCCCGC CGCCGGCGGC GCCTGCCGGC GCGAACGTCC GGAGAGCACG CATCACGATC GCCGACAACG GAATCGGTTT CGACGAGCAA TACCGCGAGC AGATCTTCGA GCCGTTCCAG CGGCTCCACG GTCCGGACGA ATATCAAGGC ACTGGCATCG GGCTGGCGAT CTGCCGCAAG ATCGTCCATC GTCACGGCGG CACGATCTCC GCGACGAGCC GTGTCGGAGA AGGATCGGTG TTCACCTTCA CCCTTCCCTT GTGCGATCAG GACGCGGCGG AGAGCTAA
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Protein sequence | MSSRSDPGQP MASATDPSGR LALDLTECDR EPIHIPGAIQ PHGYLFVVSE TDLRIASVSA NVEDLLRQPP ASLLNVPIAH YLTAASAARL THALHGGDPA AINPIRLDVV TPDGERAFNG ILHRHDSIVI LELEPRDESR YTNEFFRSVR VAIRRLQTAA DLPTACWIAA SEVRRITGFD RIKVYQFAAD WSGQVIAEDR DSGIPSLLDF HFPSSDIPAQ SRALYTINPV RIIPDIGYRP SPLVPDINPR LGGPIDLSFS VLRSVSPTHL EYMVNMGMHA AMSISIVRDN RLWGMISCHN LTPRFVSYEV RQACELIAQV LTWQIGVLEE AEIVRHSVRM RAIQNRLLHE LGDEQGLTAG LSRVSEEMLA LMGASGFALC SFDGVAAFGR TPSDDEIQAL ASWLSHRESR GIFQTQQLSA SFPEAEVYSD IASGLLAVPL GRASTTLMLW FRPEVAQTVT WGGDPHKPVQ IGPRGRRLQT RASFEAWREE VRDRSRPWRS HEIVAAEEIR DLVVDVILGR AEELENANRE LSRSNDELES FAYVAAHDLK EPLRHIEAFA GLLNDLLLPE ARSRLSLMVN GIEASSRRLR ALINDLAEYS RIGRQARPLQ PVDLNQILTE VLSDLKPMLQ DARAEVVSEP LPTVLCDGSQ IRQLLQNLIS NAVKYRDAER LPHVTIAATI DSPPPAAPAG ANVRRARITI ADNGIGFDEQ YREQIFEPFQ RLHGPDEYQG TGIGLAICRK IVHRHGGTIS ATSRVGEGSV FTFTLPLCDQ DAAES
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