| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3424 |
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| Symbol | |
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| ID | 6411098 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 3663737 |
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| End bp | 3666013 |
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| Gene Length | 2277 bp |
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| Protein Length | 758 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642713304 |
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| Product | GAF sensor signal transduction histidine kinase |
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| Protein accession | YP_001992401 |
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| Protein GI | 192291796 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.25862 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGAAG GATCCGTCGT CAGGCAGCCT GACCTCTCGA CCTGCGACGA CGAGCCGATC
CATATCCCCG GGGCCATCCA ACCGCATGGA CTGCTGCTCG CCCTCGCCGC CGACATGACG
ATCGTCGCCG GCAGCGACAA CCTTCCCGAA CTCACCGGGC TGGCGATCGG TGACCTGATC
GGCCGCTCTG CGGCCGATGT CTTCGACTCG GAGACCCACA ACCGTCTGAC GATCGCCTTG
GCCGAGCCCG GGGCGGCCGT CGGAGCACCG ATCGCTGTCG GCTTCACGAT GCGAAAGGAC
GCAGGCTTCG TCGGCTCCTG GCATCGCCAT GATCAGCTCG TCTTCCTCGA GCTCGAGCCT
CCCCAGCGGG ACGTCGCAGA GCCGCAGGCG TTCTTCCGCC GCACCAACAG CGCCATCCGC
CGCCTACAGG CCGCCGAAAC CTTGGAAAGC GCCTGTGCCG CCGCCGCACA AGAGGTGCGC
GAGATTACCG GCTTCGATCG GGTGATGATC TATCGCTTCG CCTCCGACTT CAGCGGCGAA
GTGATCGCAG AGGATCGGTG CGCCGAGGTC GAGTCATATC TCGGCCTGCA CTTTCCCGCC
TCAGACATCC CAGCACAGGC CCGTCGGCTC TACACCATCA ACCCGGTACG GATCATTCCC
GATGTCAATT ATCGGCCGGT GCCGGTCACC CCAGACCTCA ATCCGGTCAC CGGGCGGTCG
ATTGATCTTA GCTTCGCCAT CCTGCGCAGC GTCTCGCCCG TCCATCTCGA ATACATGCGC
AACATCGGCA TGCACGGCAC AATGTCGATC TCGATTTTGC GCGGCGAGCG ACTGTGGGGA
CTGATCGCCT GCCATCACCG AAAGCCGAAC TACGTCGATC TCGACGGCCG CCAAGCCTGC
GAGCTAGTCG CCCAGGTTCT GGCCTGGCAG ATCGGTGTGA TGGAAGAGCA GGCGATCACG
CGCCAGACCC TGAAAGGCCA GGCGATCCAG CGCAGCCTGA TCAACGATAT CGAGCAGCTG
CACGACCACC GCGCCGGCCT GGCGCGCAAC AGCGAAGCGT TGCTCGAATT GATGGGAGCA
TCCGGGCTCT GCCTTCACAG TCGTGAGGGC GTGATCACGA TCGGACAGAC CCCGCCCGGA
CCGATCATCG ATCAACTGGC GCAACTGGCG GGCCGGTCCG GCGGCAGCGA ACTATTCCAG
ACGGACAGGT TGTCGACCAT CATCCCTGAA GCCGGCGCTT TCGCCGAGGT CGCCAGCGGC
GTTCTCGCCG TGCCGCTGTC GCGCACGCCG CCGCGCCGAG TGATGCTGTG GTTCAGGCCG
GAAGTGGCGC AGACGGTGTA TTGGGCTGGA AACCCCGATA AGTCAGTGAC GGCGGAATCC
GGGCGCCTGC GGCCGCGCAC CTCGTTCGCC GCCTGGACCG AGCAAACCCA CGGCAGGGCG
ATCGCATGGC AGCCGCACGA AGTCGCCGCA GCGGTCGAGA TCCGGGATCT GATCATCGAC
GTGATCCTGC GCAATACCGA AAAGCTGGAG CGCATCAACA CCCAACTCGC GCGCAGCAAC
GAGGAGCTGG AGTCGTTCGC CCATGTGGCG TCGCACGACA TCAAGGAGCC GCTACGCCAC
ATCGAAGCGT TTGCCGGCCT GCTCGCCGAC AACATTCGCG AGATGGGAGA CGAACGACTG
GGCGTCATGG TCAGCGGCAT CGAGAAATCG TCGCGGCGAC TGCGCAACCT GATCAACGAT
CTGGCGGAGT TTTCCCAGCT CGGCAGGCGT TCGAAGCCGT TGTCGTGGGT GTCGCTCGAA
ACCGTTCTCA ACGAAGTGCT TGCCGATCTG CAGCCAAGGA TCACAGAAGC GCGCGCCGAG
ATCCTGGCAG ACAGACTGCC GTTCGCGCGC TGCGACCACA ATCAGATCCG CCAAGTGTTG
CAGAACCTGA TCGCGAACTC GCTCAAATAT CGCGATCAGG CGCGGCCATG CCGGATCCGG
ATCTTTGCGC AGCCCGACGA CAACGGAGGA CGCGCCGAGA TCGGCTCTGC CCCCGCCATC
CGGATCTGCG TCACCGACAA CGGCATCGGC TTCGACAAGA AGTATATCGA TCAGGTGTTC
GAGCCGTTCC AGCGGCTGCA CGGCCCCGAC GATTACGAGG GCAGCGGCAT CGGTCTGGCG
ATCTGTCGCA AGATCGTACA GCGCCACGGT GGACGCGTCG GCGTCGACAC CGTTCCGGGG
CAAGGCTCGA CCTTCTGGTT CACGCTGCCG GTATCGGACG ATCATGGGCA AGGATGA
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| Protein sequence | MTEGSVVRQP DLSTCDDEPI HIPGAIQPHG LLLALAADMT IVAGSDNLPE LTGLAIGDLI
GRSAADVFDS ETHNRLTIAL AEPGAAVGAP IAVGFTMRKD AGFVGSWHRH DQLVFLELEP
PQRDVAEPQA FFRRTNSAIR RLQAAETLES ACAAAAQEVR EITGFDRVMI YRFASDFSGE
VIAEDRCAEV ESYLGLHFPA SDIPAQARRL YTINPVRIIP DVNYRPVPVT PDLNPVTGRS
IDLSFAILRS VSPVHLEYMR NIGMHGTMSI SILRGERLWG LIACHHRKPN YVDLDGRQAC
ELVAQVLAWQ IGVMEEQAIT RQTLKGQAIQ RSLINDIEQL HDHRAGLARN SEALLELMGA
SGLCLHSREG VITIGQTPPG PIIDQLAQLA GRSGGSELFQ TDRLSTIIPE AGAFAEVASG
VLAVPLSRTP PRRVMLWFRP EVAQTVYWAG NPDKSVTAES GRLRPRTSFA AWTEQTHGRA
IAWQPHEVAA AVEIRDLIID VILRNTEKLE RINTQLARSN EELESFAHVA SHDIKEPLRH
IEAFAGLLAD NIREMGDERL GVMVSGIEKS SRRLRNLIND LAEFSQLGRR SKPLSWVSLE
TVLNEVLADL QPRITEARAE ILADRLPFAR CDHNQIRQVL QNLIANSLKY RDQARPCRIR
IFAQPDDNGG RAEIGSAPAI RICVTDNGIG FDKKYIDQVF EPFQRLHGPD DYEGSGIGLA
ICRKIVQRHG GRVGVDTVPG QGSTFWFTLP VSDDHGQG
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