Gene Rpal_3401 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3401 
Symbol 
ID6411075 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp3639425 
End bp3639997 
Gene Length573 bp 
Protein Length190 aa 
Translation table11 
GC content65% 
IMG OID642713281 
Producthypothetical protein 
Protein accessionYP_001992378 
Protein GI192291773 
COG category[S] Function unknown 
COG ID[COG3652] Predicted outer membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.380854 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCGCG CCCTCGTATT GCTGAGCTGC ATCCTCCTGG CCAGCCCGGC CATCGCCCAA 
ACGCCAGCAT CGTCGACCAC CACCACCTCA CAGGCGCCGC TCAGTGCTGC GACCGAGAGC 
TTCATTCAGC AGGTGGCGAT CTCGGATCTG TTCGAGACCG CCTCGGCACG GCTCGCGCTC 
GCCCGTGGCA ACGAAGCCCA GCAGCAATTC GCCAATCAGA TGCTGCAGGA CCACGGCAAG 
ACCTCCGGCG ACGTCCGCCG CCTGATCGTT CGCGACAGTC TCAAGGTCGA TGTGCCGAGC 
CAGCTCGATG CCCCGCACCA AGCGCTGCTT GACAAGCTGA GCGCCAGCAA CGGCGATGAT 
TTCGTCGCGA CCTATGCGGC CCAACAGGTG GAGGCGCACC AGAAGGCGGT GGCGCTGTTT 
CAGAGCTACG CCAGCAATGG CGATCTTCCC GCGCTGAAGC AATGGGCCGG GGTGACGCTG 
CCCGTACTCA AGCATCATCT GGAGATGGCG CAGAAGCTCG GCCCGGCAAA GGCCGGCGCG 
CCGACAGTCG GCTCGTCGCC CGCGCCGAAG TGA
 
Protein sequence
MKRALVLLSC ILLASPAIAQ TPASSTTTTS QAPLSAATES FIQQVAISDL FETASARLAL 
ARGNEAQQQF ANQMLQDHGK TSGDVRRLIV RDSLKVDVPS QLDAPHQALL DKLSASNGDD 
FVATYAAQQV EAHQKAVALF QSYASNGDLP ALKQWAGVTL PVLKHHLEMA QKLGPAKAGA 
PTVGSSPAPK