Gene Rpal_3365 details

Gene Information

• Locus tag: Rpal_3365
• ID: 6411039
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 3616795
• End bp: 3618951
• Gene Length: 2157 bp
• Protein Length: 718 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 642713245
• Product: Integrase catalytic region
• Protein accession: YP_001992342
• Protein GI: 192291737

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.582921
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAAAGACT ATCTCTCAGC CGCCGAGATC GCAGCGCTTG CGCTGCCCGG CCTGCCGGCC 
AGCAAGCGCG GTGTCGCGTT TGCGGCCGAG CGCGCCGGCT GGGAGAAGCG TCAGCGCAGC 
GGCAAGGGCG GCGGGCTGGA ATACGCCGTC ACCTCGCTGC CGCCTCAGGC CCGCATCGCC 
TATCTCGGTC ACCACACCAG CGAAATCGAA CTGCCGGCAT CGCTGGCCCG CGAGGCCGCG 
ACCGAGCCCG GCGCCGAGCA GCTCGGCGCG CCGGCTGCTG AAGCCCGCGA CGCGCGGCTC 
GCCTTGCTGG CGCTCGCCGA CTCGATCGCC AGTCAGGCCG AGATCGGCCG CAAGCGCGCG 
GACGTGTACT TCTGCGATTG CTACAACGCC GGTCAGATCG AGGTCGCCGG CTGGATCAAG 
TCCGAGATCA AACACCTGGC GCCGCGAACG CTGGCGCGCT GGCGTTCCTT CGCCAAGGCC 
GGGCAGAAGA CGAAGCTCGC CGTCGATCGC GCTCGTGCCC GGCGCGGAAC CGGCGTGCTC 
GATCGCGCCA ACGGAGGCGA GGTGAAGGCA TTCATTCTCG CGCTGCTGAT CCGACAGCCG 
AAACTGTCCG CTGACGACAT CGCGAAGAAT GTCGCCGATT ACTTCGGCAC CTTGCAGATC 
GGCGATCGTC GGATTCCGGT GCCTCCCGTC CGCACTTTTC AAAACACTTT GAAGGCGTGG 
AAACTCCGCC ACGGCGTCGA GCTGAAGGCG ATCTGCGATC CAGACGGTTT CAGGTCGACG 
ACGCGGATGG CCGCACGCGT CGCGATGCCG GCGCATCGCC TCAATGAAGT CTGGCAGATC 
GATGCCTCAC CGGCGGACGT GCTGCTGCTC GATGGCCGCC ATACAATCTA TGTGGGCATC 
GATGTCTATT CGCGGCGGCT GATCGCGACC GTCAGCAAGA CGCCGCGAGC CGCTGCGGTC 
GGCCTGCTGA TCCGCAAGGC GATCATATCC TGGGGCGTGC CGGAGCGGAT CAAGACCGAC 
AACGGCTCGG ACTTCGTCGC CCGCACCACG CAGCGGCTGT TCGCGGCACT CGGCATCGAG 
CACGAACTCG CACCGCCGTT CCAGCCGGAA AAGAAGGGCC ACGTCGAACG CGCGATCGGC 
ACGTTGCAGC ACGGTCTGAT GCGCTCGCTC GACGGCTTCA TCGGCCACAG CGTGGCCGAC 
CGCAAGGTGA TCGAGAACCG CCGTGGCTTC GCCAAACGGC TGGGTCAGAA AGAAGAGGAC 
GTGTTCGAGG TCGCACTGAC CGCGGCGGAT TTGCAGCATC GTCTCGACGC CTGGTGCAAT 
GACGTCTACG CCAACAAGCC GCATGCAGGA CTGAAGGGAC GGACGCCGTT CGAAGTCGCC 
GCGATGAGCA GCACTACGAT CCGGCGGATC GATGATTTGC GCGCGCTCGA TATGCTGCTC 
GCTCCCGTCG CCGGCAAAGA CGGGTTGCGC GTCGTTACCA AGACCGGGCT CCGCATCCAC 
GACACCCACT ACAACGCCGG TTTCCTCGGC CTGCACGTGC ACCGCACCGT GCTGGTCAGG 
ATGGACGAGG CCGACATGGG CCGCGCCTAC GTTTTCGAGC AAGACGGCGA AACCTATCTA 
GGCGAAGCAA TCGCGCCCGA GCTGCTCGGC ATCGATCCCG CCGCCGCAGC GCGCGCCGTT 
CGCGCCGAAC AGAAACGATT GGTCGACGAG AGCATGGCTG CGGCCAACAA GCTCCGTCGT 
GCCGTAAAGG CAATCGATCT CGCCGGTGCG ATCCACCGCC AGGCGCTGAA AGATGCCGGC 
ACGCTGGTCG AGTTTCCGAA GCCGGTCACC AGCCACGACA CGCCGGCGCT CGCCGCCGCG 
CGCAACGTCG CCGCCGGCGA GACCTCGGCG CATTCCGACG CGGTCGCCGC GATGGCCGAG 
CGGATGCGCG CCGAGGATGC GGCGAACAGC GCGGCCTCGA ACGTCCAGCC GCTACACAGC 
CAAGAGCCGA AGTGGCTGCG CTGGAACAGG GCCCGCGAGA TCGAGGCCCG CATGCGCGCC 
GACGAGTTCG TCGAGCCCGA CGATCTGTTG TGGCTCGGCA GCTACCGCCA AGGCACCGAG 
TATCGCGGCT TCCTGCTCAC CTTCGGCACA GAGGAAGAAG CCGCCGCGAG CGTCTGA 

 

Protein sequence

MKDYLSAAEI AALALPGLPA SKRGVAFAAE RAGWEKRQRS GKGGGLEYAV TSLPPQARIA 
YLGHHTSEIE LPASLAREAA TEPGAEQLGA PAAEARDARL ALLALADSIA SQAEIGRKRA 
DVYFCDCYNA GQIEVAGWIK SEIKHLAPRT LARWRSFAKA GQKTKLAVDR ARARRGTGVL 
DRANGGEVKA FILALLIRQP KLSADDIAKN VADYFGTLQI GDRRIPVPPV RTFQNTLKAW 
KLRHGVELKA ICDPDGFRST TRMAARVAMP AHRLNEVWQI DASPADVLLL DGRHTIYVGI 
DVYSRRLIAT VSKTPRAAAV GLLIRKAIIS WGVPERIKTD NGSDFVARTT QRLFAALGIE 
HELAPPFQPE KKGHVERAIG TLQHGLMRSL DGFIGHSVAD RKVIENRRGF AKRLGQKEED 
VFEVALTAAD LQHRLDAWCN DVYANKPHAG LKGRTPFEVA AMSSTTIRRI DDLRALDMLL 
APVAGKDGLR VVTKTGLRIH DTHYNAGFLG LHVHRTVLVR MDEADMGRAY VFEQDGETYL 
GEAIAPELLG IDPAAAARAV RAEQKRLVDE SMAAANKLRR AVKAIDLAGA IHRQALKDAG 
TLVEFPKPVT SHDTPALAAA RNVAAGETSA HSDAVAAMAE RMRAEDAANS AASNVQPLHS 
QEPKWLRWNR AREIEARMRA DEFVEPDDLL WLGSYRQGTE YRGFLLTFGT EEEAAASV