Gene Rpal_3346 details

Gene Information

• Locus tag: Rpal_3346
• ID: 6411019
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: -
• Start bp: 3604532
• End bp: 3606580
• Gene Length: 2049 bp
• Protein Length: 682 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 642713225
• Product: hypothetical protein
• Protein accession: YP_001992323
• Protein GI: 192291718
• COG category: [S] Function unknown
• COG ID: [COG5281] Phage-related minor tail protein

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.677729
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGGGTCT CTCTGGTCAT CGACGGCGAC AGCAACGGCG CGGTGGAAGC CGCGACCGAT 
GCGTCGAAAG CCGTCACCGA CCTGGGAACG ACCGCGACCG ATACCGCCAA GGGCCTTGAA 
GACGGCTTCA AGAAAGCCAG CGGCGCCGCC GGATCGATGA AGGGCAGCGC CGAGGCGGCG 
GGCGCGGCGA ATGACAACCT GCTGGCATCG ACTTCCGCGC TGTTATCGAA GTTCGGAGAA 
CTGGCTTCGA AGGCCAAGGG ATCGAACGAC GCGCTCGCGC TGAACGCCAG CACGGCGAGC 
AGCCTGACGG CGAGCCTGGG CGCGCTGTCG CGTTCGGTCG GCGTCGTCGG ATTCCTGACC 
GGCGCGATTG GCCTCGCGAC CGCAGCGCTC TCCGCCTACA ACGAGCTGTC GGCGCGCGCC 
AGCCGCGAGA TCGACCGGCA GCTCACCGAG CAAGCCCGCC TGATAAACGT GGTGCGCGGC 
GCTTACCAGA ATGCCAAGAC GGCGGCAGGC GATTTTTACG AGCAGAGCAA AGATGTGACG 
CTGCTGCAGC TGCGGCAGAA TCAGGTCGAT CTGCAGAGGA CGCTACAAAC GCAGGTCGGT 
TCCTTTATCG GAGGTGTTAC CAGTTTCGGC GATAGCCTTG GAAACTACTT CAATAACGTT 
AAGACAATTA GGGGAGAACT CCTACCGTTT GAAGATGCCA TCTTTAGGCT CAATGATGGC 
TTCAAACAGG GCAAGCCCGA CGTCGAAGGG TTTGTCAACG AAATTGCGCG GATCGCGTTA 
CTAGATCCCT CTCTACAAAA AGCTGCGTCA GATCTAATTA CCAAGATCAA CGAAGCGTCC 
AAGACCGCTC GGGCGCTGAA GGACCTAAGT TCTGGCGAGA AAGTCATAGA AGGAAAGGAC 
AAGCCGGAGG ATCGCAAACG CGTCGGCATC ACCGACCAGG TTTCCGACAC CGCCGGTCAG 
TTCGAGCGCC TTGCCAAGTC GATGGACCGG CAGGCCGCGA GTGCCGAGGC CGAAGCCTCC 
GCGACTGGCA AGAGCGCCGG CGAGATCGCC AAGCTGCGCG TCGAGGCGGT GCTGACCGAA 
GCCGCGCAGC AAGCCGGCGG CGGGACGGCC GAGAAGTACG CAGAGCGCAT CAAACAGATC 
GGAGATCGCG CCGGCGAAGC TGCGCAGAAG CTGGCGCTGG CTCGTGTGCA ATCGGACGCG 
GCGTTCCAGC GCCAGACGCT GGGGCTATCG GCCGACGACG CCCAGATCGC CGAGCAGCTG 
CGCGGTGCCT ATGGGGACAA CGTTCAACGG GCGTTGAGCA GCGCGGACGC CGCGGCACTG 
AAGTTCAACC AGGACATGCT GCAGCTGAAG AACACCACGC TCGACGTCAG CAAGGGGGTT 
TTCACCGATT TCCGCACCTC GATCCAGCAA GGCGCGACCG CCATGGAGGC GCTGGGCAAT 
GCTGGCGTCA ATGCGATCGG CAGGATCGCC GACAAGATCG CAAGCACTCA GCTCGACAAC 
CTGGTCTCCG GACTGTTCGG CGCGTTCACG GGGGGCAGCG GCGGCGGCCT GCTGTCGTCG 
CTATTCGGCG GTGGTAGCAA GGGCAGCTTC GCCACGGACG GCATTGGTGG TTTCGGTCCG 
ACCTTCACGG CGGCCGACGG CGGCACCTTC GGCCCCGGCT GGGGCGTGGT CGGCGAGCGC 
GGCGCCGAGA TCATCAAGGT GCACGCCGGC GGCGTCACGG TGTTTCCGCA TCACGTCAGC 
AAGCCGTATC TGCCGGGCTT CGCCGATGGC GGCTCGCTCG ATCAGCTCGG CAACATCGCG 
CGACTGCCGA GCTTTCAAAG TTCTTCGTCC GGCGGATCGG CCGGGAGCGC CGCACCGCAG 
GAGTTCCGTC TCTCCGTCAG CGTCGACGAC GACGGCAAAC TGAAAACCGT GGTGACGGAC 
GTCGCGAAGG GAATTGCTCA GGAGGTCTCT GCGGGCACCG TGAAGGACTT CGTGCGCAGC 
CCGCAATTCA CCGATCACGT CGCACGTGCA TACGGCGACG CCAAGGCCGC GTGGAAGATC 
AGATCATGA 

 

Protein sequence

MRVSLVIDGD SNGAVEAATD ASKAVTDLGT TATDTAKGLE DGFKKASGAA GSMKGSAEAA 
GAANDNLLAS TSALLSKFGE LASKAKGSND ALALNASTAS SLTASLGALS RSVGVVGFLT 
GAIGLATAAL SAYNELSARA SREIDRQLTE QARLINVVRG AYQNAKTAAG DFYEQSKDVT 
LLQLRQNQVD LQRTLQTQVG SFIGGVTSFG DSLGNYFNNV KTIRGELLPF EDAIFRLNDG 
FKQGKPDVEG FVNEIARIAL LDPSLQKAAS DLITKINEAS KTARALKDLS SGEKVIEGKD 
KPEDRKRVGI TDQVSDTAGQ FERLAKSMDR QAASAEAEAS ATGKSAGEIA KLRVEAVLTE 
AAQQAGGGTA EKYAERIKQI GDRAGEAAQK LALARVQSDA AFQRQTLGLS ADDAQIAEQL 
RGAYGDNVQR ALSSADAAAL KFNQDMLQLK NTTLDVSKGV FTDFRTSIQQ GATAMEALGN 
AGVNAIGRIA DKIASTQLDN LVSGLFGAFT GGSGGGLLSS LFGGGSKGSF ATDGIGGFGP 
TFTAADGGTF GPGWGVVGER GAEIIKVHAG GVTVFPHHVS KPYLPGFADG GSLDQLGNIA 
RLPSFQSSSS GGSAGSAAPQ EFRLSVSVDD DGKLKTVVTD VAKGIAQEVS AGTVKDFVRS 
PQFTDHVARA YGDAKAAWKI RS