| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3306 |
|---|
| Symbol | |
|---|
| ID | 6410978 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 3558335 |
|---|
| End bp | 3560986 |
|---|
| Gene Length | 2652 bp |
|---|
| Protein Length | 883 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642713184 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001992283 |
|---|
| Protein GI | 192291678 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.660449 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGGG TTGGGTGGAA CGCACGGGCG CGTAGCCTGC TGCGGGGACC GGGAAACGCG
TCAGTGCGAT GGATCGTCGG GATCGGCGTG CTGCTGATCG CCGCGATCTC GATCGTTACC
GCCTGGATGA TCGCCGACGG CCGTGAGCGC GTCCTGCGCA ACGCCGGGCG CGAACTCGGC
AACACCGCGT TGCTGCTTGC CCGCCAGTTC GACCGCACCT TCGACACCCT GAATGCCGAT
CAGAGCGACA CCGCCTCCTC GCTCGAGCAG ACTTTCCCGC TCGCCAAGGC GCTGTCGACC
CACACGCTGC TGGCGCTGAA AGCCGGCGAG CTCGGCGACC TCGACCTGTT CGACACCAGC
GGCGCGCTGA TCAACTCCTC GCGCGGCTGG CCGCTGCCGA ACGTGGAGAT CGGCGCGCAT
CCGAATTTCA AGCGCTGGAT GGCCGACTAC GAGCGCGACG AGGCCGAGGC CGAATTCATC
CGCGATCCGG TGCTCGGCGG CCTGACGCTG ACGCTGATCA AGCGCCTGCG CGGTCCGACG
CGCGCGACGA CGGGCGTTCT GACCAGGACG ATCCCGAACA CCTGGTACGA GAACCTCGCG
TCTTCGATCG TGCTCGGCGA AGACGCCTCG ATCGCAATCT TCACCAGCGG CGGCACGCTG
GTGACGCGAT GGCCACGCTT CACCCAAGCG AATGGGCAGA ACTTTCTCGA CTCCGAACTC
AAGCCGCTTT TCCTGCAGCC GAGCATCATC AGGCGGGTCA ACAGCCCGTT CGACGGTCGC
GAGCGGCTGG CGGCGGCGCG GATGCTGACC AAGCAGCCGG TATTCGTCGT GGTGTCGCGC
TCGGTCAACG GCGTGCTGTC GAGCTGGTGG CGCGAGCTGT GGGTGATGGT GGCGGTCGCA
TGCGCCTCGG CGCTCGCCGT CGCCGTGGTG CTGTTTCAGC TCGGCCGCCA GATCATCCGG
CAGGAGACCG ATTTGCGGAA GCGCTACAGC ATCGCCGTCG ACAACATGGC GCAGGGTCTG
TCGCTGTTCG ACTCCACGGG ACGGCTGTTG CTGTTCAACC AGCGCTACCT CGATTTGTAC
GGCCTGCCCG CCGGCGCGCT GAAGCCTGGC ATGCGCACCT TCGAAATCGT GCGCCAGTTG
CAGCAGGCCG GCCACGATCC ACATTTGCTC GAATCCTATC GGGCCTTCGC GCTGAAGAAC
GCCGGTGCCC GCAGTGCGTT CGAGGTCGAA TTCCCCGACG GCCGGACCAT CCTGATCACC
CGCGAGCCGA TCCCGGGCGG CGGCTGGGTC ACGACCGACG AAGAGATCAC CGAGCGCAAG
CGCTCCGACT CCCGCATCCA CCACCTCGCC CATTACGACG ACCTCACCGG CCTGCCGAAC
CGCTCGTCGT TCCGCAAGCA CCTCGGCGAG GCTCTGAACC TGATCGAGCC CGGCGACCAG
CTCGCTCTGC TCTATATCGA CATCGACGAG TTCAAGATCG TCAACGACAC CCTCGGCCAT
CCGGTCGGCG ATCAATTACT CCAGGCCCTC GCCGATCGCC TGCGGAATTG CGTCGGCCCG
GACGACTACG TCGCCCGGCT CGGCGGCGAT GAATTCGCCG TGGTGATGGC CGATGCCTCC
GACATCCGCG AGTTCGTCGC GAAGCTGCAA GCCACCCTGC GCGACAGCAT CGATTGCGCC
GGTCAGGTGC TCTCGCCGGA TGCCAGCATC GGCATCGCGC TGGCGCCGGA TCACAGCTGC
GAAGTGGACG ACCTGATCGC GAAGGCGGAC CTCGCGCTAT ACGCGGCGAA AGCCGAAGGT
CGTCGGACCT ATCGGTTCTT CATGCCGGAG ATGGACGTCA AGGCGAAGGC CAGGCACGAG
CTCGCGACCG AGCTGAAGCG CGCGGTGACC GAGCACGATT TCCGACTGCA CTTCCAGCCG
CTGGTCGATC TGAATTCCGG CACGATCGCC GGCTGCGAAG CGCTGCTGCG CTGGCAGCAT
CCGGTTCGCG GCTTCGTCTC GCCAGCCGAG TTCATTCCGC TGGCCGAAGA CATCGGGCTG
ATCGAAGACC TCGGCGAATG GGCGCTGGAT CAGGCCTGCC GTGTCGCGGT CGGCTGGCCG
GCGTCGATGA CGGTCGCGGT CAACGTGTCG CCGATCCAAT TCCGGCGCGC CACGTTCCCG
CTCAAGGTCG CCGCGGCGCT CGCCCGCACC GGGCTCGCCG CGCACCGTCT GGAGCTTGAG
ATCACCGAGG CGCTGCTGCT GCAGGACAAC GAGTCGACAC TGGCGATCCT CAATCAACTC
CGCGACCTCG GCGTCAAAAT CGCGCTCGAC GATTTCGGCA CCGGCTATTC GTCGCTCAGC
TATCTGCACC GCTTCCCGAT CGACAAGATC AAGATCGACA AGAGCTTCGT CGACACCCTC
ACCGAGGAAG CCGGATCGGC CACCATCGTC CGCGCCATCG TGCAGATCGC CGCCGCCGGC
AACAAGACCA CGCTCGCCGA AGGCGTCGAG ACCGCCGCCC AGCGCGACCT GCTGCGCCGC
CTCGGCTGCC AGCAGATGCA AGGCTACCTG TTCAGCCCCG CGCTGCCCGA GGACGCCCTG
GCGCGCCTGA TCGGTAACGC CGACGCCGAA ACGCAAACGG CGCCCCGAAG GGCGCCGTCG
ATGTCGATGT AG
|
|---|
| Protein sequence | MARVGWNARA RSLLRGPGNA SVRWIVGIGV LLIAAISIVT AWMIADGRER VLRNAGRELG
NTALLLARQF DRTFDTLNAD QSDTASSLEQ TFPLAKALST HTLLALKAGE LGDLDLFDTS
GALINSSRGW PLPNVEIGAH PNFKRWMADY ERDEAEAEFI RDPVLGGLTL TLIKRLRGPT
RATTGVLTRT IPNTWYENLA SSIVLGEDAS IAIFTSGGTL VTRWPRFTQA NGQNFLDSEL
KPLFLQPSII RRVNSPFDGR ERLAAARMLT KQPVFVVVSR SVNGVLSSWW RELWVMVAVA
CASALAVAVV LFQLGRQIIR QETDLRKRYS IAVDNMAQGL SLFDSTGRLL LFNQRYLDLY
GLPAGALKPG MRTFEIVRQL QQAGHDPHLL ESYRAFALKN AGARSAFEVE FPDGRTILIT
REPIPGGGWV TTDEEITERK RSDSRIHHLA HYDDLTGLPN RSSFRKHLGE ALNLIEPGDQ
LALLYIDIDE FKIVNDTLGH PVGDQLLQAL ADRLRNCVGP DDYVARLGGD EFAVVMADAS
DIREFVAKLQ ATLRDSIDCA GQVLSPDASI GIALAPDHSC EVDDLIAKAD LALYAAKAEG
RRTYRFFMPE MDVKAKARHE LATELKRAVT EHDFRLHFQP LVDLNSGTIA GCEALLRWQH
PVRGFVSPAE FIPLAEDIGL IEDLGEWALD QACRVAVGWP ASMTVAVNVS PIQFRRATFP
LKVAAALART GLAAHRLELE ITEALLLQDN ESTLAILNQL RDLGVKIALD DFGTGYSSLS
YLHRFPIDKI KIDKSFVDTL TEEAGSATIV RAIVQIAAAG NKTTLAEGVE TAAQRDLLRR
LGCQQMQGYL FSPALPEDAL ARLIGNADAE TQTAPRRAPS MSM
|
|---|
| |