| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3304 |
|---|
| Symbol | |
|---|
| ID | 6410975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 3553423 |
|---|
| End bp | 3554667 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642713181 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_001992281 |
|---|
| Protein GI | 192291676 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTTGCG CCCGCTTGGC ATCTTTGGCG TCTGCACGAA GGATCGGAAT TGTCGCGCTG
ATCGCAGGCG CTCCCATCAT CCTGACCGGC TGCAAGGAGC AGAACAAATA CGCTGCGCCG
CCACCAGCCA AGGTCACCGT CGCCAAGCCG ACCCAAGCGC CGGTGACGCT GTATGCGGAA
TTCACCGGCA ACACCTCGCC AGTCGCGTCG GTCGATCTCG AAGCACGGGT GCAGGGGTTT
CTCGAAAGCG TCGACTATCT CGACGGTGAG GCGGTCAAGA AGGACCGTGA GCTGTTCAAG
ATCGAGAAGG CGCAGTACCA AGCCCAGGTC GATCTGCAGC AGGCCCAGCT CGACGGCGCC
AAGGCCAAGC AGGCGAACGC CCAGCGTGAA GCCGACCGAC AGACGATCCT CGGGCAGAGG
GACGTCGCCT CGCAGCGCAA TGTCGACGAC GCCCAGACCA ATCTGGCAGC CGCCAACGCC
CAGGTCGCCG CCGCTCAGGC ATCGCTGGCG CTGGCCAAGA CCTCGCTGGG CTACACCACG
GTGACGGCGC CGTTCGACGG CGTGGTGACC CGCCGCGTGG TCAACGTCGG CACCCTGGTC
GGCTCGGCCG GCCCGACCAA GCTCGCCACC ATCCTGCAGG TCGATCCGCT CTACGTGTAT
TTCAACATCA CCGAGCAGCA GCAGATCAAT CTGCGCGACG CGCTCGCCAA GCGCGGCAAG
ACGCTGAAGG ACATGCGCGA GGAACGGCTG GAGATGCCGA TCCAGGTCGC GCTAGCGTCC
GACACCTCGT TCCAATACGC CGGCAAGATC GACTACATCG CGCCGCAGGT CGATCCATCG
ACCGGCACGC TGCAGCTCCG CGGCACGCTG CCGAACAAGG ACGTGGCGCT GGTGCCGGGC
CTGTTCGTCC GGGTCCGGGT CGCGGTCGGC CAGCTCGACG ACGCCCTGCT GATCAACGAC
ACCGCGGTGA TGTCCAACCA GACCGGCAGC TACGTGATGG TGGTCGGCGC CGGCGACGTC
GTCGAGCAGC GCCAGGTCAC GCTCGGGCCG CAGGAAGGTC AGCTTCGGGT CGTCACCAGC
GGATTGAAGG CTGACGACCG TGTGGCGATC GGCGCGATCC AGCGCGCCAT TGCCGGCAAC
ACCGTGACGC CGGTCGCCGG GACGATGGCG GCCGCCCCGA CCACGCCGAC CCCGGCGCCT
GCCGCGCTGA GCCCTGGAGC CGGATCCGGC ACCGCGAAAC CCTGA
|
|---|
| Protein sequence | MICARLASLA SARRIGIVAL IAGAPIILTG CKEQNKYAAP PPAKVTVAKP TQAPVTLYAE
FTGNTSPVAS VDLEARVQGF LESVDYLDGE AVKKDRELFK IEKAQYQAQV DLQQAQLDGA
KAKQANAQRE ADRQTILGQR DVASQRNVDD AQTNLAAANA QVAAAQASLA LAKTSLGYTT
VTAPFDGVVT RRVVNVGTLV GSAGPTKLAT ILQVDPLYVY FNITEQQQIN LRDALAKRGK
TLKDMREERL EMPIQVALAS DTSFQYAGKI DYIAPQVDPS TGTLQLRGTL PNKDVALVPG
LFVRVRVAVG QLDDALLIND TAVMSNQTGS YVMVVGAGDV VEQRQVTLGP QEGQLRVVTS
GLKADDRVAI GAIQRAIAGN TVTPVAGTMA AAPTTPTPAP AALSPGAGSG TAKP
|
|---|
| |