| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3303 |
|---|
| Symbol | |
|---|
| ID | 6410974 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 3552021 |
|---|
| End bp | 3553274 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642713180 |
|---|
| Product | peptidase T |
|---|
| Protein accession | YP_001992280 |
|---|
| Protein GI | 192291675 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2195] Di- and tripeptidases |
|---|
| TIGRFAM ID | [TIGR01882] peptidase T |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCGCGA TTAACTTCGA CTTCACCGTG TTGGAGCGTT TTCTCCGCTA CGTCACCATC
GACACCCAAT CGGACCCGCA TTCCGGATCC TGCCCGTCCA CAGAAAAGCA GAAGGACCTC
GGCGCGCTGC TGGCGCAGGA GCTGCGCGAA TTGGGCCTCG TCGATGCGCA TCTCGACCAG
CACGGCTACG TCTACGCGAC GATTCCCGCG ACCACCGCGA AACAGAACGT TCCGGTAATC
TGCTTCTGTG CCCACATGGA CACCTCGCCC GATTGTTCAG GAGCTGGCGT CAAACCGCAG
GTCTGGAAGG ACTATCAGGG CGGCGACATC GTCCTGCCGG GTGATAAGTC GCAGGTGATT
CGGCGCGCCG AGCACCCGGC GCTGTCGAAT CAGATCGGCC ACGACATCGT CACCAGCGAC
GGCACCACCC TGCTCGGCGC CGACAACAAA GCCGGCGTCG CCGAGATCAT GGATGCGGCG
CGGTTTCTGC TAGCGCACCC CGAGATTAAG CACGGCACGC TCAAGATCCT GTTCACCCCG
GACGAAGAGA TCGGCCGCGG TGTCGACAAG GTCGACCTCG CCAAGCTCGG CGCCGATTTC
GCCTTCACCA TGGACGGCGA AAGCGCCGGG CATATCGAGG ATGAGACGTT CTCGGCCGAC
AGCGCGGTGA TCACCATCGA GGGCGTCAGC GCCCATCCGG GATTCGCCAA GGGCAAGATC
GAGCACGCCA TCAAGATCGC CGCGGCGATC ATCGAGCGGC TGCCCAAGAC CGGATGCTCG
CCGGAGACCA CCGAAGGACG CGAAGGCTTC CTGCATCCGA TCGGAATCAC CGGCACGCTG
GAGAAGGCCA GCGTCAGCTT CATCGTCCGG GATTTCACAG AAGCCGGACT GAGGGACAAG
GAAACGCTGC TGCAGAGCAT CGTCGAAGAG GTGATGCTGG ATTATCCGCG CTCGCGCGCC
AAGATCGAGA TCCAGCCGCA ATATCGCAAC ATGAAGCAGG TGCTCGACCG CCATCCCGAG
CTGGTCGAGA ACGCCCGTGA AGCGATCCGC CGTGCCGGCC TCACGCCGGT CACCGCCGCG
ATCCGCGGCG GCACCGATGG CGCGCGGCTG TCGTTCATGG GCCTGCCCTG CCCCAACGTG
TTCGCCGGCG AGCACGCCTT CCACTCCCGT CTGGAATGGG TCAGCCGCCA GGACATGGAG
AAGGCGGTCG AGACCATCGT GCATCTGGCA ACGATCTTCG AAGAGCAGGC GTAA
|
|---|
| Protein sequence | MTAINFDFTV LERFLRYVTI DTQSDPHSGS CPSTEKQKDL GALLAQELRE LGLVDAHLDQ
HGYVYATIPA TTAKQNVPVI CFCAHMDTSP DCSGAGVKPQ VWKDYQGGDI VLPGDKSQVI
RRAEHPALSN QIGHDIVTSD GTTLLGADNK AGVAEIMDAA RFLLAHPEIK HGTLKILFTP
DEEIGRGVDK VDLAKLGADF AFTMDGESAG HIEDETFSAD SAVITIEGVS AHPGFAKGKI
EHAIKIAAAI IERLPKTGCS PETTEGREGF LHPIGITGTL EKASVSFIVR DFTEAGLRDK
ETLLQSIVEE VMLDYPRSRA KIEIQPQYRN MKQVLDRHPE LVENAREAIR RAGLTPVTAA
IRGGTDGARL SFMGLPCPNV FAGEHAFHSR LEWVSRQDME KAVETIVHLA TIFEEQA
|
|---|
| |