Gene Rpal_3289 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3289 
Symbol 
ID6410959 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp3539699 
End bp3540337 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content64% 
IMG OID642713165 
ProductNADH dehydrogenase subunit J 
Protein accessionYP_001992266 
Protein GI192291661 
COG category[C] Energy production and conversion 
COG ID[COG0839] NADH:ubiquinone oxidoreductase subunit 6 (chain J) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.272221 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGATGC CCGTCCTGTT CTTCTATCTC TACGCCGGGG TGGCGATCGC TGCCGCGGTG 
ATGGTCGTGG TCGCCCGCAA CCCGGTGCAC TCCGCGCTGT TCCTGATCCT GGTGTTCGTC 
AACGCCGCCG GCATGTTCGT GCTGATGGGG GCCGAATTCC TGGCGATGAT CCTGATCGTG 
GTCTATGTCG GCGCCGTCGC GGTGCTGTTC CTGTTCGTGA TCATGATGCT GGACGTCGAC 
TACAGCCAGC TCCGCGAAGG CTTCCTCGAA TATCTGCCGT TCGGCCTCTT GATCGGCTTC 
ATCTTCCTGG CCGAGCTGCT GCTGCTGGCC GGCGGCTGGG TGATCAGCCC GACCGTCACC 
AAAGCGGTGA CCTCGCCGAT CCCGACCGGC GTGTCCAACA CCGAGGCGCT CGGCCTCGTG 
CTCTACACCC GCTACATCCA CTACTTCCAG GTGTCGGGCA TGGTGCTGCT GGTGGCGATG 
GTCGGCGCGA TCGTGCTGAC GCTGCGTCAC AAGAAGAAGG TCAAGCGGCA GGATATCGCC 
GCGCAGAACG CCCGCTCCAA GGAAACGGCG ATGGCGATCC GCCACGTCAA GACGGGGCAG 
GGCCTGTCCG ACAACGATGC CGGGGAGTGG GTGCGATGA
 
Protein sequence
MSMPVLFFYL YAGVAIAAAV MVVVARNPVH SALFLILVFV NAAGMFVLMG AEFLAMILIV 
VYVGAVAVLF LFVIMMLDVD YSQLREGFLE YLPFGLLIGF IFLAELLLLA GGWVISPTVT 
KAVTSPIPTG VSNTEALGLV LYTRYIHYFQ VSGMVLLVAM VGAIVLTLRH KKKVKRQDIA 
AQNARSKETA MAIRHVKTGQ GLSDNDAGEW VR