Gene Rpal_3286 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3286 
Symbol 
ID6410956 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp3535720 
End bp3537237 
Gene Length1518 bp 
Protein Length505 aa 
Translation table11 
GC content64% 
IMG OID642713162 
ProductNADH dehydrogenase subunit M 
Protein accessionYP_001992263 
Protein GI192291658 
COG category[C] Energy production and conversion 
COG ID[COG1008] NADH:ubiquinone oxidoreductase subunit 4 (chain M) 
TIGRFAM ID[TIGR01972] proton-translocating NADH-quinone oxidoreductase, chain M 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.573256 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGGCTT CGATCATGAC CTGGCCGGTG CTCTCGGTCG TTACGTTCCT GCCGGTGCTC 
GGCGCTGCAC TGGTCTATCT CGCCCGCGGC GAGGATGAGG CGGCGCGGCG TAATGCCCGC
TGGATCTCGC TGTGGACCAC GCTGATCACC TTCGCGGTGT CGCTGCTGCT GGTCTGGCAC
TTCGATCCGG CCAACCCGGG CTTCCAGTTC GTCGAAAAGG CGCCCTGGCT CGGCAACACC
ATCACCTATC ACATGGGTCT CGACGGCATT TCGCTGCCGC TGGTGATCCT GACCACCGCA
ATCATGCCGT TCTGCATCAT CGCGAGCTGG CGCTCGGTGA CGGTGCGGGT GCGCGAATAC
ATGATCGCGT TCCTGATCCT CGAAACGCTG ATGATCGGCA CCTTCTCGGC GCTGGATCTG
GTGCTGTTCT ATCTGTTCTT CGAAGGCGGC CTGATCCCGA TGTTCCTGAT CATCGGCATC
TGGGGCGGTC CGCGCCGGGT GTACGCGTCG TTCAAGTTCT TCCTGTACAC GCTGCTCGGC
TCGGTGCTGA TGCTGCTGGC GATCATGGCG CTGTACTGGA ACGCCGGCAC CACCGACATT
CCGACCCTGA TGCGCACCTC GGTCCCGAGC GGTCTGCAGA CCTGGGCGTG GCTGGCGTTC
TTCGCTTCGT TCGCGGTGAA GATGCCGATG TGGCCGGTGC ACACCTGGCT GCCGGATGCC
CACGTCGAAG CGCCGACGGC GGGCTCGGTC GTGCTCGCCG CGATCCTGCT GAAGATGGGC
GGCTACGGCT TCCTGCGGTT CTCGCTGCCG ATGTTCCCCG ACGCCTCGGC GTATTTCGCG
CCGCTGATCT ACACCCTGTC GGTGATCGCG ATCATCTACA CTTCGCTGGT CGCTCTGATG
CAGGAGGACA TCAAGAAGCT GATTGCGTAC TCCTCGGTGG CGCATATGGG CTTCGTCACC
ATGGGCATCT TCGCCGGCAC CACCCAGGGC GTCGCCGGCG CGGTGTTCCA GATGGTCAGC
CACGGCATTG TGTCAGGCGC GCTGTTCCTC TGCGTCGGCG TCGTCTACGA CCGGATGCAC
ACCCGCGAGA TCGCCGCCTA TGGCGGCCTG GTCAACCGGA TGCCGCTGTA CGCGCTGGTG
TTCTTGGTGT TCACCATGGC CAATGTCGGC CTGCCTGGCA CCTCCGGCTT CGTCGGTGAA
TTCCTGACGC TGCTTGGCAC CTTCCGCGTC AACATCCCGA CCGCGACGCT GGCGACCACC
GGCGTGATCC TGTCGGCCGG CTACGCGCTG TGGCTGTATC GCAAGGTGGT GTTCGGCGCG
ATGACCAAGC CGGCTCTCGC CAGCATCAAG GATCTGACCT GGCGCGAGGG CCTGATGATG
GCGCCGCTGC TGGTGCTGAC GATCCTGTTC GGCTTCTATC CGAAGCCGGT TCTCGACATG
TCGGCCGCCT CCGTTCAGCA ACTCGTCAAC AACTACGCCG CCGCCGTGAC TGCCGTGAAG
GCAGCGGCGC TGCCGTGA
 
Protein sequence
MSASIMTWPV LSVVTFLPVL GAALVYLARG EDEAARRNAR WISLWTTLIT FAVSLLLVWH 
FDPANPGFQF VEKAPWLGNT ITYHMGLDGI SLPLVILTTA IMPFCIIASW RSVTVRVREY
MIAFLILETL MIGTFSALDL VLFYLFFEGG LIPMFLIIGI WGGPRRVYAS FKFFLYTLLG
SVLMLLAIMA LYWNAGTTDI PTLMRTSVPS GLQTWAWLAF FASFAVKMPM WPVHTWLPDA
HVEAPTAGSV VLAAILLKMG GYGFLRFSLP MFPDASAYFA PLIYTLSVIA IIYTSLVALM
QEDIKKLIAY SSVAHMGFVT MGIFAGTTQG VAGAVFQMVS HGIVSGALFL CVGVVYDRMH
TREIAAYGGL VNRMPLYALV FLVFTMANVG LPGTSGFVGE FLTLLGTFRV NIPTATLATT
GVILSAGYAL WLYRKVVFGA MTKPALASIK DLTWREGLMM APLLVLTILF GFYPKPVLDM
SAASVQQLVN NYAAAVTAVK AAALP