Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_3286 |
Symbol | |
ID | 6410956 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | - |
Start bp | 3535720 |
End bp | 3537237 |
Gene Length | 1518 bp |
Protein Length | 505 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642713162 |
Product | NADH dehydrogenase subunit M |
Protein accession | YP_001992263 |
Protein GI | 192291658 |
COG category | [C] Energy production and conversion |
COG ID | [COG1008] NADH:ubiquinone oxidoreductase subunit 4 (chain M) |
TIGRFAM ID | [TIGR01972] proton-translocating NADH-quinone oxidoreductase, chain M |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.573256 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGGCTT CGATCATGAC CTGGCCGGTG CTCTCGGTCG TTACGTTCCT GCCGGTGCTC GGCGCTGCAC TGGTCTATCT CGCCCGCGGC GAGGATGAGG CGGCGCGGCG TAATGCCCGC TGGATCTCGC TGTGGACCAC GCTGATCACC TTCGCGGTGT CGCTGCTGCT GGTCTGGCAC TTCGATCCGG CCAACCCGGG CTTCCAGTTC GTCGAAAAGG CGCCCTGGCT CGGCAACACC ATCACCTATC ACATGGGTCT CGACGGCATT TCGCTGCCGC TGGTGATCCT GACCACCGCA ATCATGCCGT TCTGCATCAT CGCGAGCTGG CGCTCGGTGA CGGTGCGGGT GCGCGAATAC ATGATCGCGT TCCTGATCCT CGAAACGCTG ATGATCGGCA CCTTCTCGGC GCTGGATCTG GTGCTGTTCT ATCTGTTCTT CGAAGGCGGC CTGATCCCGA TGTTCCTGAT CATCGGCATC TGGGGCGGTC CGCGCCGGGT GTACGCGTCG TTCAAGTTCT TCCTGTACAC GCTGCTCGGC TCGGTGCTGA TGCTGCTGGC GATCATGGCG CTGTACTGGA ACGCCGGCAC CACCGACATT CCGACCCTGA TGCGCACCTC GGTCCCGAGC GGTCTGCAGA CCTGGGCGTG GCTGGCGTTC TTCGCTTCGT TCGCGGTGAA GATGCCGATG TGGCCGGTGC ACACCTGGCT GCCGGATGCC CACGTCGAAG CGCCGACGGC GGGCTCGGTC GTGCTCGCCG CGATCCTGCT GAAGATGGGC GGCTACGGCT TCCTGCGGTT CTCGCTGCCG ATGTTCCCCG ACGCCTCGGC GTATTTCGCG CCGCTGATCT ACACCCTGTC GGTGATCGCG ATCATCTACA CTTCGCTGGT CGCTCTGATG CAGGAGGACA TCAAGAAGCT GATTGCGTAC TCCTCGGTGG CGCATATGGG CTTCGTCACC ATGGGCATCT TCGCCGGCAC CACCCAGGGC GTCGCCGGCG CGGTGTTCCA GATGGTCAGC CACGGCATTG TGTCAGGCGC GCTGTTCCTC TGCGTCGGCG TCGTCTACGA CCGGATGCAC ACCCGCGAGA TCGCCGCCTA TGGCGGCCTG GTCAACCGGA TGCCGCTGTA CGCGCTGGTG TTCTTGGTGT TCACCATGGC CAATGTCGGC CTGCCTGGCA CCTCCGGCTT CGTCGGTGAA TTCCTGACGC TGCTTGGCAC CTTCCGCGTC AACATCCCGA CCGCGACGCT GGCGACCACC GGCGTGATCC TGTCGGCCGG CTACGCGCTG TGGCTGTATC GCAAGGTGGT GTTCGGCGCG ATGACCAAGC CGGCTCTCGC CAGCATCAAG GATCTGACCT GGCGCGAGGG CCTGATGATG GCGCCGCTGC TGGTGCTGAC GATCCTGTTC GGCTTCTATC CGAAGCCGGT TCTCGACATG TCGGCCGCCT CCGTTCAGCA ACTCGTCAAC AACTACGCCG CCGCCGTGAC TGCCGTGAAG GCAGCGGCGC TGCCGTGA
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Protein sequence | MSASIMTWPV LSVVTFLPVL GAALVYLARG EDEAARRNAR WISLWTTLIT FAVSLLLVWH FDPANPGFQF VEKAPWLGNT ITYHMGLDGI SLPLVILTTA IMPFCIIASW RSVTVRVREY MIAFLILETL MIGTFSALDL VLFYLFFEGG LIPMFLIIGI WGGPRRVYAS FKFFLYTLLG SVLMLLAIMA LYWNAGTTDI PTLMRTSVPS GLQTWAWLAF FASFAVKMPM WPVHTWLPDA HVEAPTAGSV VLAAILLKMG GYGFLRFSLP MFPDASAYFA PLIYTLSVIA IIYTSLVALM QEDIKKLIAY SSVAHMGFVT MGIFAGTTQG VAGAVFQMVS HGIVSGALFL CVGVVYDRMH TREIAAYGGL VNRMPLYALV FLVFTMANVG LPGTSGFVGE FLTLLGTFRV NIPTATLATT GVILSAGYAL WLYRKVVFGA MTKPALASIK DLTWREGLMM APLLVLTILF GFYPKPVLDM SAASVQQLVN NYAAAVTAVK AAALP
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