| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3270 |
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| Symbol | dnaE |
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| ID | 6410940 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3518923 |
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| End bp | 3522378 |
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| Gene Length | 3456 bp |
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| Protein Length | 1151 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642713146 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_001992247 |
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| Protein GI | 192291642 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAACG CCGGATTCGT CCATCTGCAC GTCCACTCGG CCTATTCGCT GCTGAAAGGC
TCGATGAAGA TCGCCAAGCT CGCGGAGCTG GCGAAGGCCG ACCGGCAACC GGCGCTGGCC
CTTACCGACA CCGACAACAT GTTCGGCGGG CTGGAATTCT CCGACAAGCT GTCGGGCTAC
GGCATCCAGC CGATCGTCGG GCTCGAACTC GGCATCGACT TCGGCGACCA GGATCCGAAC
TCCCGCCACG GTGCGCTGGC GACCCCGGCG CGGATCGTGC TGCTGGCGGC GCGCGAGCAG
GGCTATCGCA GCCTGATGCG GCTGAACTCG CGGGCGTTCC TGGAAACGCC GGTCAACCAG
GTGCCGCACG TCAAACTGGA GTGGCTCGAG GGTGAAACCG ACGGCGTGAT TGCGCTGACC
GGCGGGCCGG ATGGGCCGAT TTCGCTGGCG ATGCTGACCG ATCCGGCGCT CGCCGCGCAG
CGCTGCGAGC GGCTGCAGCA GGCATTCGGC GATCGGCTCT ATGTCGAACT GCAGCGTCAT
GGCACCGAGG CCGAGCGCCG CGCCGAAGGC GGGCTAATTG ATCTCGCCTA TGACAAGGGC
CTGCCGCTGG TCGCGACCAA CGAGCCGCAT TTCGCCAGCA CCGAGGACTA CGAAGCACAC
GACGCGCTGT TGTGTATCGC GTCCGGCAAG CTGATCGCCG AAACCGATCG CGTTCAGTTC
ACCCCGGATC ACCGGTTCAA GACCCGCGCC GAGATGGCGG TGCTGTTCGC CGACCTGCCC
GAGGCCCTGG CATCGACGGT GGAGATCGCA CAGCGCTGCG CCTACCGGCC GCTCACCCGC
AAGCCGATCC TGCCGCTGTT CACCGTCGGC GCCAGCGTCA GCGACGCGGC GGAAGCAGCC
GCCGCCGAAG CGGCCGAGCT GCGCCGCCAG GCCGAGCAGG GCCTCGCCAA GCGGCTCAGC
GTTCACGGCC TGTCGCCGGG GACGACCGAG GAGGACTACA ACAAGCGGCT CGCCTTCGAG
CTCGACGTCA TCACCCGCAT GAAATACGCG GGCTACTTCC TGATCGTTTC GGACTTCATC
AAATGGGCCA AGGCCCATGG CATTCCGGTC GGTCCGGGCC GTGGTTCGGG CGCCGGCTCG
CTGGTGGCGT ATTCGCTGAC GATTACCGAC CTCGATCCGA TCCGGTTCGG CCTGCTGTTC
GAGCGCTTCC TCAATCCGGA ACGCGTGTCG ATGCCGGACT TCGATATCGA CTTCTGCCAG
GATCGCCGCG GCGAAGTAAT CGAGTATGTG CAGCATCGCT ATGGTCGCGA TCAGGTGGCG
CAGATCATCA CCTTCGGTAC CCTGCAGGCG CGCGGCGTGC TGCGCGACGT CGGCCGCGTG
CTGCAGATGC CGTACGGCCA GGTCGACAAG CTGACCAAGC TGGTGCCGCA GAATCCGGCG
GCGCCGATCA CCCTGAAACA GGCGATCGAA GGCGAGCCGA AGCTGCAGGC GGCGCGCGAC
GAGGACCCGA TCGTGGCGCG CGCGTTCGAC ATCGCGCAGA AGCTCGAAGG CCTGACCCGC
CACGCCTCGA CCCACGCGGC CGGCATCGTG ATCGGCGATC GCCCGCTCAG CGACCTGGTG
CCGCTGTATC GCGATCCGAA ATCCGACATG CCGGTGACCC AGTTCAACAT GAAGTGGGTC
GAACCGGCGG GTCTGGTGAA GTTCGACTTC CTCGGCCTGA AGACGCTGAC GACGCTCGAC
GTCGCGGTGA AGCTGCTCAA GCAGCGCGAT ATCCATGTCG ACCTGCACAC GCTGCCGATC
GACGACGCGC CGAGTTATCA GATGCTGGCC CGCGGCGATG TCGTCGGCGT GTTCCAGGTG
GAAAGCGCGG GCATGCGGCG GGCGCTGATC GACATGCGCC CCGACCGGTT CGAAGACATC
ATCGCGCTGG TGGCGCTGTA TCGGCCGGGC CCGATGGCGA ACATCCCGAC CTACTGCGCC
CGCAAACACG GCGACGAGGA GCCCGAATAT CTGCATCCGA TGCTGGAGCC GATCCTGAAG
GAGACGTTCG GCGTCATCAT CTACCAGGAA CAGGTGATGC AGATCGCGCA GGTGATGGCC
GGCTACTCGC TCGGCGACGC CGACCTGCTG CGCCGCGCGA TGGGTAAGAA GATCCGCGCT
GAGATGGACA AGCAGCGCGC GATTTTTGTC GAAGGCGCGG TGAAGAACGG CGTCGCCAAG
GACGCCGCCG ATACCATCTT CGACCTTTTG GCGAAGTTCG CCGACTATGG CTTCAACAAG
AGCCACGCGG CCGCCTATGC GCTGGTGTCG TACCACACCG CCTATATGAA GGCGCACTAT
CCGGTCGAAT TCCTTGCCGC GTCGATGACG CTGGAAATCC ACAACACCGA CAAGCTGTCG
GAATTCCGCG CCGAGGCGCA GCGGCTCGGC ATCAAGGTCG AGGCGCCCTC GGTCAATCGT
TCGGGCGCCA CCTTCGAGGT CGGCCCGAAC ACGATCTTCT ACGCGCTCGC CGGCCTGAAG
GGCGTCGGCA TGCAGGCGGT GCAGCAGATC GTCGAGGCGC GGGGCGATCG GCCGTTCACC
TCGCTCGCGG ACTTCTCCGC CCGGGTCAAT CCGCGCGCCA TCAACAAGCG AGTCATCGAG
TGCCTCGCCG CCGCCGGCGC GTTCGACTGC CTCGATTCCA ACCGCGCTCG TGTGTTCGGC
GGCGCCGATG CGATCGTCGC GGCCTGCCAG CGCAATCATG AAGCCGCGAC CAGCGGGCAG
AACGACATGT TCGGCGGCCT GTCGGACGCG CCATCGATCA TCCTGCCGCA GCTCGAGCCG
TGGCTGCCGG CGGAACGGCT GCGCCGCGAA TACGATGCGA TCGGCTTCTT CCTGTCAGGC
CATCCGCTCG ACGACTACGC CACCGCCTTG AAGCGGCTGC GGGTGCAGTC CTGGGCGGAA
TTCTGCAAGG CGGTGAAATC CGGCGCCACC GCAGGCAAGG TGGCCGCCAC CGTGGTGTCG
CGGATGGAGC GGCGCACCAA GACCGGCAAC AAGATGGGCA TCATTGGCCT GTCGGATCCG
ACCGGGCATT TCGAGGCGGT GCTGTTCTCC GAAGGTCTGG CGCAATATCG CGAGGTGCTG
GAGCCTGGCG CCGCGGTGCT GATGCAGCTC GGCGCCGAAC TGCAGGGCGA GGACGTGCGC
GCCCGCGTGC TGCATGCCGA ACCGCTCGAT GCCGCGGCGG CGAAGACTCA GAAGGGCCTG
CGCATCTTCC TCCGCGACAC TAAGTTCCTC GACTCAGTCG TCAAGCGGCT GCAGCCGCCC
GAGACCAAGG TGGCGGGCGG CAACATCGCG CTGGTGCTGC GGCTTGATCC GCAGACCGAG
GTCGAGTTCG ATATTCCCGG GCGCTACCAC GTGTCGCCGC AAATTGCCGG TGCGATCAAG
GCGGTGACGG GAGTCGAGCA CGTCGAAACG CTGTGA
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| Protein sequence | MSNAGFVHLH VHSAYSLLKG SMKIAKLAEL AKADRQPALA LTDTDNMFGG LEFSDKLSGY
GIQPIVGLEL GIDFGDQDPN SRHGALATPA RIVLLAAREQ GYRSLMRLNS RAFLETPVNQ
VPHVKLEWLE GETDGVIALT GGPDGPISLA MLTDPALAAQ RCERLQQAFG DRLYVELQRH
GTEAERRAEG GLIDLAYDKG LPLVATNEPH FASTEDYEAH DALLCIASGK LIAETDRVQF
TPDHRFKTRA EMAVLFADLP EALASTVEIA QRCAYRPLTR KPILPLFTVG ASVSDAAEAA
AAEAAELRRQ AEQGLAKRLS VHGLSPGTTE EDYNKRLAFE LDVITRMKYA GYFLIVSDFI
KWAKAHGIPV GPGRGSGAGS LVAYSLTITD LDPIRFGLLF ERFLNPERVS MPDFDIDFCQ
DRRGEVIEYV QHRYGRDQVA QIITFGTLQA RGVLRDVGRV LQMPYGQVDK LTKLVPQNPA
APITLKQAIE GEPKLQAARD EDPIVARAFD IAQKLEGLTR HASTHAAGIV IGDRPLSDLV
PLYRDPKSDM PVTQFNMKWV EPAGLVKFDF LGLKTLTTLD VAVKLLKQRD IHVDLHTLPI
DDAPSYQMLA RGDVVGVFQV ESAGMRRALI DMRPDRFEDI IALVALYRPG PMANIPTYCA
RKHGDEEPEY LHPMLEPILK ETFGVIIYQE QVMQIAQVMA GYSLGDADLL RRAMGKKIRA
EMDKQRAIFV EGAVKNGVAK DAADTIFDLL AKFADYGFNK SHAAAYALVS YHTAYMKAHY
PVEFLAASMT LEIHNTDKLS EFRAEAQRLG IKVEAPSVNR SGATFEVGPN TIFYALAGLK
GVGMQAVQQI VEARGDRPFT SLADFSARVN PRAINKRVIE CLAAAGAFDC LDSNRARVFG
GADAIVAACQ RNHEAATSGQ NDMFGGLSDA PSIILPQLEP WLPAERLRRE YDAIGFFLSG
HPLDDYATAL KRLRVQSWAE FCKAVKSGAT AGKVAATVVS RMERRTKTGN KMGIIGLSDP
TGHFEAVLFS EGLAQYREVL EPGAAVLMQL GAELQGEDVR ARVLHAEPLD AAAAKTQKGL
RIFLRDTKFL DSVVKRLQPP ETKVAGGNIA LVLRLDPQTE VEFDIPGRYH VSPQIAGAIK
AVTGVEHVET L
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