| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3269 |
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| Symbol | |
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| ID | 6410939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3516275 |
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| End bp | 3518761 |
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| Gene Length | 2487 bp |
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| Protein Length | 828 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 642713145 |
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| Product | peptidase C14 caspase catalytic subunit p20 |
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| Protein accession | YP_001992246 |
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| Protein GI | 192291641 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4249] Uncharacterized protein containing caspase domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.336347 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTCTCA ATCATCTTTT CTCGGTCGTC TCCACCATCC TCGTTGTTCT GATCGCCGGG
CCGGTTGGTC CTGCGGCTGC ACAGCAGCAG GAAAAACGCA TCGCGCTGGT GATCGGCAAT
GGTGCCTATG CCAAGGCGCC ACTCTCGACT GCCGCCAATG ATGGCGGCCT GATCGCGCAA
ACCCTGCAGG CGGCAGGCTT CGACGTCAGC GGTGCCCGCG ACCTCGACGG CGACACGCTG
CGCGGCGCCT TTCGCGACTT TGTGAAGAAG GCCGAGGACT CCGGTCCTGA CACTGTCGCG
GCAGTGTATC TGGCCGGCTA CGGCGTGCAG TACGCCGGCG AGAACTACTT CATCCCTGTC
GACTCGCGGC TGTCGCGCGA CACGGAGATT CCGACCGAAG GCCTGCGTAT CAGCGACTAT
CTGCGCCAGC TCGCGGCGCT GCCGCTGAAG ACCAGTGTCG TGGTGCTCGA TCTGGCGCGC
GAGCAGCCGT TCGTGCCCGG CGGATCGGTC GCCTCGGGTC TCGCCATGGT CGAGCCGAAC
CCGAAGATGC TGATCGCCTA CAACGCCGCG CCCGGCACTG TGGCGCCGGA GGAGCGCGGC
GCCTACGGCG TCTATGCGCA AGCGCTCGCC GAGATGATCC GCACCGGCGG GCTGACGCTG
CCGCAGCTGT TCGATCGCGT GCGGCTGCGC GTCAATGAGA CGACCAAGGG CGCGCAGGTG
CCTTGGGATA CGCAGAGCGT GGAGTCGAAC TTCATGTTCT TCGATCGCGC GCCCGATGCG
CCGCCGCTGC CGGCGCCGGA TCAGGCGCTC CGCAGCAAGC CGATCCGCGA CATGGGCGCC
GCCGAAGCGT ACGCGGCTGC ACTCGATCGC GACACGCTGC AGGCTTACGA AGATTTTCTT
GCAGCCTATC CCAATGATCC GCTGGCCAAG CGGGTGAGGG TGATCGTCGC CGCACGGCGT
GAGGCGATTA CTTGGCGGCG GACGTATCGC GTCGATACGC CGGACGCGTA CTGGTCGTAT
CTGCGCCGCT ATCCGCGCGG TCCGCACGCG GCGGACGCCC GGCGCCGGCT GGAGATCCTC
GCCGCTGCAC TGGAGCCGCC GCCGAGCTTC ACGGTGATCG ACTATGACGT GCCGCCGCCG
CCGCCCGACG AGATCGTCTA TGTCGACCGT CCGGTGCTGA TGTTCAGCGA TCCGGTGTTC
GATTTCGCGC CGCCGCCACC GTCGCCGGTG TTCTTCCTGC CGCCACCGCC GCCGGATTTC
GTGGTGCTAC CGCCACCGCC GCCGCCGATC GGCCTGTTCT ATCTGCCAAG GCCGTTGTTC
GTGCCGATCC CGGCCTATGT CCGGCCGCCG GTCTATGTGC AGCCGCCGCC GAACAACATC
ATCTTCGCCA ACATCCACAA CACCACCGTG ATCAATCAGG TGATCAACCA GCCGCCGGCC
GCCCTCGCCA ATCCGGCCAC GCCGGTGGTG AGCCCGCCGG TGACTGGGCC TGCGGTTGCG
ACACCTGGCG CGACTGCGCC GGCAGTCACC GCGGCGGCGG TCGCGTCAGG CGCCGTACTC
GGCGCGGCGC TGCCGGCCGC CGCGCTGCAT CGCGCCACGC TGATCCAGCA GGGTAAGGCA
CCGGTGCCGC AAAGCGCGTC GATTGCCACG ACGCCGCCCG GCGGGTTTGC GCAACGTCCG
GGCGTTCAGC TTCAGGGCCC GCGGCTGGCG CAGCCCGCAG CCACGCCGAC ACAGGCTCCG
ACTACGACCG CTCCGGTCTC CGCGCCGACG CCGGCTCCTG GATCGCCGCC GAGCCAACCG
ACCGGACCAG CCGTCGCGGC CCCAGCGGGG CAGGGCAGGC CGGCGCCAAC CGCGCCCGCC
GGCGCTGCAC CGGCCGTCCA GGCGTTGCCG GTCCCTGGAA CCAAGGGATT GCCACCCGCG
CCGGGTGTCG CCGCTCGTCC GGGGGCTCCT TCGGTGGTTC AGCCGCAGCC TCCGGGTCGG
CCGGCGCTCG GCCCGGGCGG CCCGGCCGCG GCCCGAAACG GGACCGTCGC GCCACCGGCC
GGATCGGCGC CGAAGCCGCT CGCAGGCACG CCGCCGGCCG GCGGAGGCCC GGCCGTGCGT
CCCGAAGCCG TTCGCCCGCA GCAGGCTCCC ACCGCCAGGT TGCGGCCGAC TCCGCCGGTT
ACGGCGCCCG CCAGACCGGC GGGACCGCCG CCTGCGGCAG CCGTTGACCG TCGTCCGGCG
CCTGCGGCTC CACGGATCCA GCGCCCAGCG CCGCCGACGC TGTCCCGTCC GGTCCCGCCG
CCGATGCATG TGGCTCCCCG GGTTGCTCCG CCGCCACCGC CTCAACATGC GGCGCCGCGG
ATGGCGCCGC CGCCGGCTCC GGTTCGCGCG GCACCTCCGC CGCCCCATGT AGCTCCGCCG
CGGCCGCCGG CGCCGCCAAG GGCCGCCCCG CCGCCGCGGC CTCAGGGACC CGCCAAACGG
TGTCCGCCCG GCGCAAAGGA GTGCTGA
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| Protein sequence | MRLNHLFSVV STILVVLIAG PVGPAAAQQQ EKRIALVIGN GAYAKAPLST AANDGGLIAQ
TLQAAGFDVS GARDLDGDTL RGAFRDFVKK AEDSGPDTVA AVYLAGYGVQ YAGENYFIPV
DSRLSRDTEI PTEGLRISDY LRQLAALPLK TSVVVLDLAR EQPFVPGGSV ASGLAMVEPN
PKMLIAYNAA PGTVAPEERG AYGVYAQALA EMIRTGGLTL PQLFDRVRLR VNETTKGAQV
PWDTQSVESN FMFFDRAPDA PPLPAPDQAL RSKPIRDMGA AEAYAAALDR DTLQAYEDFL
AAYPNDPLAK RVRVIVAARR EAITWRRTYR VDTPDAYWSY LRRYPRGPHA ADARRRLEIL
AAALEPPPSF TVIDYDVPPP PPDEIVYVDR PVLMFSDPVF DFAPPPPSPV FFLPPPPPDF
VVLPPPPPPI GLFYLPRPLF VPIPAYVRPP VYVQPPPNNI IFANIHNTTV INQVINQPPA
ALANPATPVV SPPVTGPAVA TPGATAPAVT AAAVASGAVL GAALPAAALH RATLIQQGKA
PVPQSASIAT TPPGGFAQRP GVQLQGPRLA QPAATPTQAP TTTAPVSAPT PAPGSPPSQP
TGPAVAAPAG QGRPAPTAPA GAAPAVQALP VPGTKGLPPA PGVAARPGAP SVVQPQPPGR
PALGPGGPAA ARNGTVAPPA GSAPKPLAGT PPAGGGPAVR PEAVRPQQAP TARLRPTPPV
TAPARPAGPP PAAAVDRRPA PAAPRIQRPA PPTLSRPVPP PMHVAPRVAP PPPPQHAAPR
MAPPPAPVRA APPPPHVAPP RPPAPPRAAP PPRPQGPAKR CPPGAKEC
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