| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3264 |
|---|
| Symbol | |
|---|
| ID | 6410934 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 3511614 |
|---|
| End bp | 3512372 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642713140 |
|---|
| Product | undecaprenyl pyrophosphate synthase |
|---|
| Protein accession | YP_001992241 |
|---|
| Protein GI | 192291636 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0020] Undecaprenyl pyrophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00055] undecaprenyl diphosphate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAAAG CTGCCGCGCC TCTGCCTGAT CCGTCCGACC CACCGAGCGC GCCCGCGCAC
GTGGCGATTA TCATGGACGG CAACGGCCGC TGGGCCGCCG CTCGCGGGCT ACCCCGTGCC
GAAGGCCATC GCCGCGGCGT CGAAGCGCTC CGTCGCGTGG TCCGCGCGTC CAGCGAACTC
GGCATCCAGT ATCTGACCAT CTTCTCGTTC AGCTCGGAAA ACTGGGCGCG CCCGGCGACT
GAAATCGTCG ACCTGTTCGG GCTGCTGCGC CGCTTCATCC GCAACGATCT CGCATCCCTT
CACCGCGACG GCGTCCGCAT TCGGGTGATC GGCGAGCGCG ACCGGCTCGA CCGCGACTTG
TGCGCGATGC TCGACGAGGC GCAGGAGTTG ACCCGCAACA ACACCAAACT CAATCTGGTG
GTGGCGTTCA ACTACGGCTC CCGCCAGGAG ATCGCCAATG CGGCGCAGCG CCTGGCGCGC
GAAGTCGCCG AGGGCAAGCG CGACCCGGCG ACGATCGATA TCGAGACTCT CGGTCGCTAT
CTCGATGCCC CCGACATTCC CGATCCCGAC CTGATCATCC GCACCAGCGG AGAACAACGA
TTGTCGAATT TCCTGATGTG GCAGGCGGCG TACAGTGAAT TGGTATTCGT GCCCATTCAC
TGGCCGGATT TCGACAAGGC CGCGCTGGAA GGCGCGATCG CCGAATATTC GCGGCGCGAG
CGCCGGTTCG GCGGGTTGGC CGCCAAGACA GGATCGTGA
|
|---|
| Protein sequence | MSKAAAPLPD PSDPPSAPAH VAIIMDGNGR WAAARGLPRA EGHRRGVEAL RRVVRASSEL
GIQYLTIFSF SSENWARPAT EIVDLFGLLR RFIRNDLASL HRDGVRIRVI GERDRLDRDL
CAMLDEAQEL TRNNTKLNLV VAFNYGSRQE IANAAQRLAR EVAEGKRDPA TIDIETLGRY
LDAPDIPDPD LIIRTSGEQR LSNFLMWQAA YSELVFVPIH WPDFDKAALE GAIAEYSRRE
RRFGGLAAKT GS
|
|---|
| |