| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3171 |
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| Symbol | secF |
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| ID | 6410841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 3415764 |
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| End bp | 3416882 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642713049 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_001992150 |
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| Protein GI | 192291545 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.203608 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACACACT GGATTTTGGT CGGGCTGGGC GTTCTGATCG TGGTGCTGAC GGTCGTCAGC
ATCTTCGGCT GGCTGCCGTC GCTGCGCATC GTTCCCGATA ACACTCACTT CGATTTCACC
CGCTTCCGCC GCATCAGCTT CCCGATCTCG GCGGTGCTGT CGATCGCCGC CATCACGCTG
TTCTTCACCC ACGGGCTGAA TTTCGGCATC GACTTCCGCG GCGGCACGTT GCTCGAAGTT
CGCGCCCATT CCGGCGCGGC CGATATCGCC GGCATGCGCG AGACGCTGAG CAAGCTCAGT
CTCGGTGACG TGCAGTTGCA GCAGTTCGGC GGTCCGGCCG AAGTGCTGAT CCGTATCGCC
GAGCAGCCCG GCGGCGACCA GGCGCAGCAG GTGGCAGTTC AGAAGGTGCG CGCCGCGCTC
GGCGACTCGG TCGACTATCG CCGCGTCGAA GTGGTCGGCC CGCGCGTCTC CAGCGAGCTG
CTCGCGTTCG GCATGCTCGG CCTGATGGTC GCGATCCTGG GCATTCTGGT CTATCTCTGG
TTCCGCTTCG AATGGCAGTT CGCGCTCGGC GCGATGATCG CCAACGTCCA CGACATCGTG
CTGACGATCG GCTTCATGTC GATCAGTCAG GTCGATTTCG ACCTGACCTC GATCGCGGCG
CTGCTGACCA TTCTCGGCTA CTCGCTCAAC GACACCGTCG TGATCTACGA CCGTATCCGC
GAGATGCTGC GGCGCTACAA GAAGATGCCG ATGCCGCAGC TCCTGAACGA GTCGATCAAC
TCGACGCTGT CGCGCTCGAT CATCACCCAC GTCACGGTGA CGCTGGCGCT GCTCGCGCTG
CTGTTGTTCG GCGGCCATGC GATCCACTCG TTCACCGCGG TGATGATGTT CGGCGTGGTG
CTGGTCGGCA CCTACACATC GATCTTCATT GCGGCGCCGA TCCTGATCTA TCTTGGTGTC
GGCACCCATC GGCTCGATGA GCCGGCAGAG AAGCCGGCCA AGCCCGAGCC GGTGGCGCCG
CTCGCTGCTG CCGAAGAGAT CCCGGCCCAG TTCGTCGAGC CTGAACCGGC CGCGCCGGCA
TCCAAGCCGG CGAAGGCCGG CAAGCCGAAG AAGCGATAA
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| Protein sequence | MTHWILVGLG VLIVVLTVVS IFGWLPSLRI VPDNTHFDFT RFRRISFPIS AVLSIAAITL
FFTHGLNFGI DFRGGTLLEV RAHSGAADIA GMRETLSKLS LGDVQLQQFG GPAEVLIRIA
EQPGGDQAQQ VAVQKVRAAL GDSVDYRRVE VVGPRVSSEL LAFGMLGLMV AILGILVYLW
FRFEWQFALG AMIANVHDIV LTIGFMSISQ VDFDLTSIAA LLTILGYSLN DTVVIYDRIR
EMLRRYKKMP MPQLLNESIN STLSRSIITH VTVTLALLAL LLFGGHAIHS FTAVMMFGVV
LVGTYTSIFI AAPILIYLGV GTHRLDEPAE KPAKPEPVAP LAAAEEIPAQ FVEPEPAAPA
SKPAKAGKPK KR
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