| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3168 |
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| Symbol | |
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| ID | 6410838 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 3412885 |
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| End bp | 3414321 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642713046 |
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| Product | tRNA (uracil-5-)-methyltransferase Gid |
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| Protein accession | YP_001992147 |
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| Protein GI | 192291542 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1206] NAD(FAD)-utilizing enzyme possibly involved in translation |
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| TIGRFAM ID | [TIGR00137] tRNA:m(5)U-54 methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.459747 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAGCA GAACAGCCCC CGCCTCACCC GTCGTTCATG TCATCGGCGC CGGCCTCGCC
GGCTCGGAAG CCGCATGGCA AATCGCCCGC GCCGGTGTGC GGGTTGTGCT GCATGAAATG
CGGCCAATCC GGACCACCGA GGCCCACAAG ACCGATGGTC TTGCCGAGTT GGTGTGCTCG
AATTCGTTCC GCTCCGACGA TGCCGCCAAC AACGCGGTGG GGCTGCTGCA CGCTGAGATG
CGCAGGCTTG GCTCATTGAT CATGCAGGCG GCCGACGCCA ATCAGGTCCC GGCCGGCGGA
GCGCTTGCAG TCGATCGCGA CGGCTTTTCA GCCGCAGTCA CCAAGGCACT GGCCGAGCAC
CCCCTGATCG AGATCTGCCG CGAGGAGATC GACGGCTTGC CGCCGCAGGA GTGGACCAAC
GTCGTGATCG CAACCGGCCC GCTGACCTCG GCACCGCTCG CCGACGCGAT CCGAGGCCTC
ACCGACGAGA GCGCGCTGGC GTTCTTCGAC GCGATCGCGC CGATCGTGCA CCGCGACTCG
ATCGATATGT CGGTCGCTTG GTTCCAATCG CGCTACGACA AGGTCGGCCC TGGCGGCACC
GGCGCTGATT ATCTGAATTG CCCGATGACC CGCGAGCAGT ACGACGCTTT CGTCGACGCG
CTGATCGAGG GCGAGAAGGT CGACTTCAAG GATTGGGAGA AGGACACGCC GTATTTCGAC
GGCTGCCTCC CGATCGAAGT GATGGCCGAG CGCGGCCGCG AGACGCTGCG GCACGGCCCG
ATGAAGCCGG TCGGCCTGAC CAATCCGCAC AACCCGACGG TGAAGCCCTA CGCCATCGTC
CAGCTCCGGC AGGACAACAA GCTGGGCACG CTGTACAACA TGGTCGGCTT CCAAACCAAG
TTGAAGCACG GCGCGCAACT GCGCGTTTTC CGTACTATTC CAGGGCTCGA AAACGCTGAA
TTTGCAAGAC TTGGCGGGCT ACATCGCAAC ACGTTTCTGA ACTCGCCTAA ATTGCTCGAT
GAAAGCCTTC GGCTGCGCGC TTCGCCGCGG CTGCGGTTCG CCGGGCAGAT GACCGGCTGC
GAGGGTTACG TCGAATCCGC GAGCATCGGA CTGTTCGCTG GACTGGCCGC TGCGGCCGAC
CTGGTGGGCC AGTCGCTGGC CCCGCCGCCG CCGACCACGG CGCTCGGCGC CCTGCTCGGC
CACATCACCG GCGGCCATAT CGAAACCATC GACGCCGGTC CGCGCTCGTT TCAGCCGATG
AACATCAATT TTGGCCTGTT CCCGCCACTC GCCAACCCGC CGACAAAGGG GCCGGACGGC
AAGCGCCTGC GCGGCCCGGA AAAATCGGTT GCCAAGAAGC AGGCGCTCAG CGCTCGCGCC
CTCGCCGACA TCGACGCCTG GATCGCCGCG CACCTGAAGC TGCCGAAGGC GGCGTAG
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| Protein sequence | MISRTAPASP VVHVIGAGLA GSEAAWQIAR AGVRVVLHEM RPIRTTEAHK TDGLAELVCS
NSFRSDDAAN NAVGLLHAEM RRLGSLIMQA ADANQVPAGG ALAVDRDGFS AAVTKALAEH
PLIEICREEI DGLPPQEWTN VVIATGPLTS APLADAIRGL TDESALAFFD AIAPIVHRDS
IDMSVAWFQS RYDKVGPGGT GADYLNCPMT REQYDAFVDA LIEGEKVDFK DWEKDTPYFD
GCLPIEVMAE RGRETLRHGP MKPVGLTNPH NPTVKPYAIV QLRQDNKLGT LYNMVGFQTK
LKHGAQLRVF RTIPGLENAE FARLGGLHRN TFLNSPKLLD ESLRLRASPR LRFAGQMTGC
EGYVESASIG LFAGLAAAAD LVGQSLAPPP PTTALGALLG HITGGHIETI DAGPRSFQPM
NINFGLFPPL ANPPTKGPDG KRLRGPEKSV AKKQALSARA LADIDAWIAA HLKLPKAA
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