| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3149 |
|---|
| Symbol | |
|---|
| ID | 6410819 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 3394429 |
|---|
| End bp | 3395721 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642713027 |
|---|
| Product | beta-lactamase |
|---|
| Protein accession | YP_001992128 |
|---|
| Protein GI | 192291523 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.360137 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCTC CCTTCGTTTC GATCAGCCGT CGTCAAGTTC TCCAAGCCAT CGGCGTGACG
CTGACGATGC CTGCTGTGCG GGCCGCAACA GCGGCGCCCG CGAGCGCGGC GGCTACTCCC
AAGCCCGAGA AGCTGGCGCG GCTCAACGCT TTCTTCGAAC ATGAAGTTGC TGCGGGGAAG
CTGCCGGGTG CCGTAGTGCT GATCCAGCAG CACGGCAGGC CGGTTTACCT GCAGTGCTTC
GGCTGGCGTA CTGCCGCGCG GCAGCACCGG ATGACGCCGG ACACGATCTT CGCGCTGCAT
TCGATGACCA AGCCCATCAC CAGCGTCGCG GCGATGATGC TGATCGACGA GCGGCGACTT
GGATTGCAGG ATCCACTGTC GAAGTACATT CCGTCGTTTG CACGCGTAAA GGTCGGGGTC
GAGACCGTCG AAGACGGCAA GCCGACGCTG AAGCTGGTCG CGCCCGATCG GCCGGTGACG
ATCGAAGACC TGCTGCGCCA CACCTCGGGG ATTACTTACG AATATATCGG CGGCGAACTG
ATTATGGCGG CGTATCAGCA GGCGAATCTA TTCGCCGGCC GATTCGACAA CGCCGAGTTC
GCGGAACGGA TCGCCCGTTT GCCGCTGGCG CGCCAGCCCG GCAGGCTGTG GCGCTACGGC
CATTCGACCG ATGTGCTCGG CCGCGTCATC GAGATCGTGT CGGGCGAGCC GCTGTACGAC
TTTCTCAAGC ACCGGCTGTT CGATCCGCTC GGCATGACCA GCACCAGCTT TGTGCTGCGA
ACCGAGGCGG AGCAAGCGCG GATGGCCGCG GTGTTCCCCA CCGATACCGT ACTGGCCGAT
GCCGAGCGGC AGCGCGGCGC GCATCCGGAA TGGCAATCGG GTGGCGGCGG GTTGCTGTCG
ACCGTCATCG ACTATGCGCG GTTCGCCCAG ATGCTGCTGG AAGGAGGCGT GCTCGACGGT
CGCCGCTATC TCAGCGCTGC GGCGTTCAAG GCGATGACCA CCGACCAGAT CGGCCCGGGC
TCCGGCGTCG AGCGCGACTA CTTCTATTTT CCCGGCGATG GGTTCGGCTA CGGCTACGGT
CTGGCAGTGC GGGTTGAGCC GGGGGAGGCA ACCCCGCCCG CGCCTGGCTC GATCGGCGAA
CTGAAATGGG ACAGCGGCAG TGGCACCTAT TTCGGCGTCG ACCCGTCGCT CGACATGATT
TACGTCCTGA TGCAGCAGAC CGAGACTGAA CGCGGCCGCG TGGTACCGGA GTTCAAGAAG
CTGGTTTACG ACGCCTTCGC CGTCAACGAC TGA
|
|---|
| Protein sequence | MPPPFVSISR RQVLQAIGVT LTMPAVRAAT AAPASAAATP KPEKLARLNA FFEHEVAAGK
LPGAVVLIQQ HGRPVYLQCF GWRTAARQHR MTPDTIFALH SMTKPITSVA AMMLIDERRL
GLQDPLSKYI PSFARVKVGV ETVEDGKPTL KLVAPDRPVT IEDLLRHTSG ITYEYIGGEL
IMAAYQQANL FAGRFDNAEF AERIARLPLA RQPGRLWRYG HSTDVLGRVI EIVSGEPLYD
FLKHRLFDPL GMTSTSFVLR TEAEQARMAA VFPTDTVLAD AERQRGAHPE WQSGGGGLLS
TVIDYARFAQ MLLEGGVLDG RRYLSAAAFK AMTTDQIGPG SGVERDYFYF PGDGFGYGYG
LAVRVEPGEA TPPAPGSIGE LKWDSGSGTY FGVDPSLDMI YVLMQQTETE RGRVVPEFKK
LVYDAFAVND
|
|---|
| |