Gene Rpal_3142 details

Gene Information

• Locus tag: Rpal_3142
• ID: 6410812
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris TIE-1
• Kingdom: Bacteria
• Replicon accession: NC_011004
• Strand: +
• Start bp: 3388219
• End bp: 3390282
• Gene Length: 2064 bp
• Protein Length: 687 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 642713020
• Product: UvrD/REP helicase
• Protein accession: YP_001992121
• Protein GI: 192291516
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0210] Superfamily I DNA and RNA helicases

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.345803
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTCCTTGC CCGCTCCGAT CCTCGATGGC CTCAATCCCG AGCAGCGCTG CGCCGTCGAG 
CACGGCGCGG GGCCGGCGCC CTGCCCGCCA CTGCTCGTGA TCGCCGGCGC CGGCAGCGGC 
AAGACCAACA CGCTGGCACA CCGGGTGGCT CATTTGGTTG TCGGCGGAGC CGACCCGTAT 
CGCATCCTAC TGATGACGTT CTCGCGCCGC GCTGCCGCCG AGATGACCCG CCGGGTCGAG 
CGGATCGCCC GCAAGGTGCT CGGCGACCGC GCATCGGCGC TGAGCGGCGG CCTGCACTGG 
GCCGGCACCT TCCACGGCAT CGGCGCCCGG CTGCTGCGCG ACTATGCCGA GCGGATCGGG 
CTCGATCCAG GCTTCACCAT CCACGATCGA GAAGACTCTG CCGATCTGAT GAACCTGGTC 
CGCCACGATC TCGGCTTCTC CAGGACCGAC AGCCGGTTTC CGGCCAAGGC GACGTGCCTG 
TCGATCTACT CGCGCTGCGT CAACGCCGGC CAGCCGCTCG ATGTCGTGCT CGGCGCCAAC 
TACCCGTGGT GCGCCGGCTG GGCCGCCGAG CTGAAGCAAC TATTCGCCGC CTATGTCGAA 
GCCAAGCAAC GCCACAACGT GCTCGATTAC GACGACCTGC TGCTGTACTG GGCGCAGGTG 
ATGGAGGAGC CGGCTTTCGC CGAAGAGATC AGCGGCCGGT TCGATCACGT GCTGGTGGAC 
GAGTATCAGG ACACGAACGC GCTGCAGGCG CGGGTGCTAC TGGCACTCAA GCCCAACGGC 
GCCGGATTGA CCGTGGTCGG CGACGACGCC CAGGCGATCT ACTCGTTTCG CGCCGCCACG 
GTGCGCAACA TCCTCGACTT CCCGAAGGCC TTCGATCCGC CCGCTCGCGT CGTCACGCTG 
GACCGCAACT ATCGCTCGAC CCAGGCGATC CTGTCGGCCG CCAATGGCGT GATCGATCTG 
GCACGCGAGC GTTTCACCAA GAACCTATGG ACCGATCGGG CCGAAGGTTC GCGGCCGCTG 
CTGGTCGGCG TCCGCGACGA AGCCGATCAG GCGCGCTACA TCGTCGAGCG GGTGCTCGAT 
GCCCGCGAGG GCGGCGCGAC GCTGAAGCAG CAGGCGGTGC TGTTCCGCAC CTCGTCGCAT 
TCCGCTCCGC TGGAGCTCGA GCTGACCCGG CGCAACATCC CGTTCGTCAA ATTCGGCGGG 
CTGAAGTTTC TCGACGCCGC GCACGTCAAG GACATGCTGG CGCTACTGCG CTTCGTGCAG 
AACCCGCGCG ACCGCGTCGC CGGATTCCGG GTGATGCTGC TGATGCAGGG CGTCGGCCCG 
GCGTCGGCGC AGAAGGCGCT GGATGCAATG ACGGCCACGG CCGACCCGCT GGGCACGCTG 
ACCGCCCTGC CCGCGCCGCC GCGCGCCGCC ACCGACTGGC GCGGCTTCGT CGCTGCGGTG 
CAGGAGTTGC GTAGCGGCGA TGCCGGCTGG CCGGCCGAGA TCGAACGTGC GCTGATCTGG 
TACGCGCCGC ATCTCGATCG CATCCACGAG GATGCCGAAA CCCGCAGGGC CGATCTGGTG 
CAGCTCGCGC AGATCGCCTC GGGATATCCG TCGCGCGAGC GCTTCCTCAC CGAATTGACG 
CTCGATCCGC CGGACGCGAC CTCCGATCAG GCCGGCGTGC CGACGCTCGA CGACGACTAT 
CTGATCCTGT CGACGATCCA TTCCGCCAAA GGCCAGGAAT GGAAGCAAGT GTTCGTGCTC 
AACGTCGTCG ATGGCTGCAT GCCGTCCGAC CTCGGCACCG GTACCTCGGC CGAGATCGAG 
GAAGAGCGTC GCCTGCTCTA TGTGGCGATG ACGCGGGCGA AAGACAATCT GCACCTCGTG 
GTGCCACAGC GGTTCTTCAC CCACGGCCAG AACGCCCAAG GCGACCGCCA CGTCTATGCG 
GCCCGCACCC GCTTCATTCC CGAGCGGCTG CTGCCCCTAT TCGAACGCAC CAGCTGGCCC 
CGCGTCACGC CCGAAGCCGC CGCGGCGGCG CAGCGCGGCC CGCGTATCGA CATCAACTCG 
CGGATGCGGC GGATGTGGAC CTGA 

 

Protein sequence

MSLPAPILDG LNPEQRCAVE HGAGPAPCPP LLVIAGAGSG KTNTLAHRVA HLVVGGADPY 
RILLMTFSRR AAAEMTRRVE RIARKVLGDR ASALSGGLHW AGTFHGIGAR LLRDYAERIG 
LDPGFTIHDR EDSADLMNLV RHDLGFSRTD SRFPAKATCL SIYSRCVNAG QPLDVVLGAN 
YPWCAGWAAE LKQLFAAYVE AKQRHNVLDY DDLLLYWAQV MEEPAFAEEI SGRFDHVLVD 
EYQDTNALQA RVLLALKPNG AGLTVVGDDA QAIYSFRAAT VRNILDFPKA FDPPARVVTL 
DRNYRSTQAI LSAANGVIDL ARERFTKNLW TDRAEGSRPL LVGVRDEADQ ARYIVERVLD 
AREGGATLKQ QAVLFRTSSH SAPLELELTR RNIPFVKFGG LKFLDAAHVK DMLALLRFVQ 
NPRDRVAGFR VMLLMQGVGP ASAQKALDAM TATADPLGTL TALPAPPRAA TDWRGFVAAV 
QELRSGDAGW PAEIERALIW YAPHLDRIHE DAETRRADLV QLAQIASGYP SRERFLTELT 
LDPPDATSDQ AGVPTLDDDY LILSTIHSAK GQEWKQVFVL NVVDGCMPSD LGTGTSAEIE 
EERRLLYVAM TRAKDNLHLV VPQRFFTHGQ NAQGDRHVYA ARTRFIPERL LPLFERTSWP 
RVTPEAAAAA QRGPRIDINS RMRRMWT