| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3128 |
|---|
| Symbol | |
|---|
| ID | 6410799 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 3374371 |
|---|
| End bp | 3377298 |
|---|
| Gene Length | 2928 bp |
|---|
| Protein Length | 975 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642713008 |
|---|
| Product | putative monovalent cation/H+ antiporter subunit A |
|---|
| Protein accession | YP_001992109 |
|---|
| Protein GI | 192291504 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1009] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit
[COG2111] Multisubunit Na+/H+ antiporter, MnhB subunit |
|---|
| TIGRFAM ID | [TIGR00940] Tmonovalent cation:proton antiporter
[TIGR00943] monovalent cation:proton antiporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCAGA ACGTCTATCT TCTCGCGGTG ATCCTTCTCC CGTTCGCCGG CAGCCTGCTT
GCGGCGCTGC TGCCGGCTAA TGCTCGGAAT GCGGAGGCTT GGCTGGCTGC CCTCGTCGCA
CTCGGCTGCC TGGCGCTGCT GGTACTGCTG TATCCCGGCG CCGAGACTGT GCCGATCCGT
TATCAGCTCG AGTGGTTGCC GCAATTCGGC CTGAACTTCA CGCTGCGGCT GGACGGGTTC
GCCTGGGCGT TCGCCTGTCT GATCACCGCG ATCGGTGCTC TGGTCGTTCT GTACGCCCGC
TACTACATGT CGCCGTCCGA CCCGGTGCCG CGGTTCTTTT CCTTCCTGCA GGGCTTCATG
GGCGCGATGC TGGGCATCGT GCTGTCCGGC AATCTGATCC AGCTGGTGTT CTTCTGGGAG
CTCACCAGCC TGTTCTCGTT TCTGCTGATC GGCTACTGGC ACCACAACGC CGCGGCGCGT
GAGGGCGCGC GCGTGGCGCT GACCATCACC GGCACCGGCG GGCTGTGCCT GTTCGCGGGT
GTCGTCGTGC TCGGCCATAT CGTCGGCAGC TACGACCTCG ACGCCGTGCT GTCGGCTGGC
ACCGAGGTCC GCGGCCACGC GCTGTACGTG CCGACGCTGA TCCTGATCCT GCTCGGCGCG
CTGACCAAGA GCGCGCAGTT TCCGTTCCAT TTCTGGCTGC CGCGGGCGAT GACGGCGCCC
ACTCCGGTCT CCGCCTATCT GCACTCCGCC ACCATGGTGA AGGCCGGCGT ATTCCTGCTG
GTGCGGCTGT GGCCGGTGCT CGGCGGCACC AATGAATGGC TGTGGATCGT CGGCACCACC
GGCCTCGCCA CCTTCATCGT CGGCGCCTAC CTCGCGGTGT TCCAGCGCGA CCTGAAGGGC
CTGCTCGCCT ACTCCACCAT CAGCCATCTC GGCCTGATCA CGCTGCTGAT CGGCCTCGAC
CGGCCGCTGG CGCTGGTCGC GGCGATCTTC CACATCTTCA ACCATGCCAC CTTCAAGGCG
TCGCTGTTCA TGGCGGCTGG CATCATCGAT CACGAGACCG GTACGCGTGA TCTGCGCCGG
CTCAGCGGCC TCTGGAAGTT CATGCCGAAG ACCGGCGCGC TGGCGATCGT CGCCGCTTCG
GCGATGGCCG GCGTGCCGCT GCTGAACGGC TTCTTGTCCA AGGAGATGTT CTTCGCCGAG
ACGATCGAGA CCCATGACGG TTCGATGCTC GACGACGCCC TCCCCTATAT CGTCACCCTC
GCCAGCATGT TCACGGTGGC GTATTCGCTG CGGTTCATCC GCGAGGTTTT CTTCGGCCCG
CCGCCGGTCG ATCTGCCCCG CACGCCCCAC GAGCCGCCGC GCTGGATGCG GTTTCCGGTC
GAGCTGCTGG TGCTGACCTG TCTGGTGGTC GGCATCGTGC CGTCGTTGAC GATCGGGCCG
TTCCTGCAGC TTGCGGTGCA TGCGGTGCTT GGCGCCGCGA CGCCGTATTA CAGCCTCGCG
GTCTGGCACG GCTTCAACTG GCCGTTGCTG ATGAGTGTGA TCGCCCTGGT CGGCGGAGTG
CTGTTGTACC TGATGCTGCG CGAGCCGCTG CAGCAGGGGC TGACGAGCTC GCTGTTCGCC
GGGCGGTTCA AGACCCAGCG GGTGTTCGAT CTGGTGCTGG TGACCGTGTC GTGGCGCTGG
GCGCGCGCGA TCGAGCGGGT GTTCGGCACC CGCCGGCTGC AACCGCAATT GCTGCTGTTG
GTCTGCGTCG CGCTGATTGC GGCTACGGTG CCGGTGCTGA CGCGCGGTCT AAGCCTCGCG
CCGGTCGCGC TCGGCGGCAT CGATCCGGCG CTCGCCGTGG TGTGGTCCGT CGGCATCGCC
TGCGCGCTCG GCGGTACGGC CGTGGCCAAA TTCCACCGGC TGGCGGCGCT GATCCTAATC
GGCGGTTCGG GGCTGACGAC CTGCCTCACC TTCGTCTGGT TCTCCGCACC CGATCTGGCG
CTCACTCAGA TCGGCGTCGA GATCGTCACG ACCGTGCTGT TGCTGCTCGG GTTGCGCTGG
CTGCCGAAGC AGCTCGAGAC CGGCGAGATC ACCGCCAACC GAAGCGTCCT CAAGCTCGTG
CAGCGGATCC GCGACCTCGC GGTCGCTGCA GCTGCCGGCA TCGGCGTTGC GCTGCTGGCC
TATGCGGTGA TGACCCGCGC CGCGCCCGAC AGCATCGCGC AGTTCTTCAT GCGCCACGCT
TACGCGGACG GCGGCGGCAC CAACGTCGTC AACGTCATTC TGGTCGACTT CCGCGGCTTC
GATACGCTCG GCGAGATCAC CGTGCTGGCG GTGGTGGCGC TCACGGTGTT CGCCCTGCTC
CGCCGCTTCC GCCCCGCCGC CGACAGTATC GACATCCCCG AGCAGCAGCG CCTGCAGGAC
GAGCACGACG ATGCCGACGC CGATCGCCGC AAGGGCGACA CCATCGCCGA TTATCTGGCG
GTGCCGGCGA TGATCATGCA GCTATTGTTT CCGTTCATCT TCATCGCCGC GATGTATCTG
CTACTGCGCG GCCATGATCA GCCCGGTGGT GGCTTCGTGG CCGGCATCGC GATGGCGGCG
GCGCTGATCC TGCAATACAT GGCGGGCGGC GCCCGCTGGA TCGAAGCGCG GCTGCGCATT
CATCCGCTGC GCTGGATCGC CATCGGGTTG CTGCTGGCGT TGTTCACCGG CGCTGCAGCG
CTGCCGCTGG CCCGCCCGTT CCTCACCTCC GCCTTCGCCT ATGCCGAGAT CCCGTGGATC
GGCAAGGTGC CTCTCGCCAG CGCGGCGCTG TTCGACCTCG GCGTGTTCTC GCTCGTGGTC
GGCGCGACCG CGCTGATGCT GCTGGCCCTG GCGCACCAAT CGATCCGCGG CCATCGCCGC
CCCTCCGGCG GCCGTGCCGC AACGCCCGAG GTCAGCCGAT GGAACTGA
|
|---|
| Protein sequence | MPQNVYLLAV ILLPFAGSLL AALLPANARN AEAWLAALVA LGCLALLVLL YPGAETVPIR
YQLEWLPQFG LNFTLRLDGF AWAFACLITA IGALVVLYAR YYMSPSDPVP RFFSFLQGFM
GAMLGIVLSG NLIQLVFFWE LTSLFSFLLI GYWHHNAAAR EGARVALTIT GTGGLCLFAG
VVVLGHIVGS YDLDAVLSAG TEVRGHALYV PTLILILLGA LTKSAQFPFH FWLPRAMTAP
TPVSAYLHSA TMVKAGVFLL VRLWPVLGGT NEWLWIVGTT GLATFIVGAY LAVFQRDLKG
LLAYSTISHL GLITLLIGLD RPLALVAAIF HIFNHATFKA SLFMAAGIID HETGTRDLRR
LSGLWKFMPK TGALAIVAAS AMAGVPLLNG FLSKEMFFAE TIETHDGSML DDALPYIVTL
ASMFTVAYSL RFIREVFFGP PPVDLPRTPH EPPRWMRFPV ELLVLTCLVV GIVPSLTIGP
FLQLAVHAVL GAATPYYSLA VWHGFNWPLL MSVIALVGGV LLYLMLREPL QQGLTSSLFA
GRFKTQRVFD LVLVTVSWRW ARAIERVFGT RRLQPQLLLL VCVALIAATV PVLTRGLSLA
PVALGGIDPA LAVVWSVGIA CALGGTAVAK FHRLAALILI GGSGLTTCLT FVWFSAPDLA
LTQIGVEIVT TVLLLLGLRW LPKQLETGEI TANRSVLKLV QRIRDLAVAA AAGIGVALLA
YAVMTRAAPD SIAQFFMRHA YADGGGTNVV NVILVDFRGF DTLGEITVLA VVALTVFALL
RRFRPAADSI DIPEQQRLQD EHDDADADRR KGDTIADYLA VPAMIMQLLF PFIFIAAMYL
LLRGHDQPGG GFVAGIAMAA ALILQYMAGG ARWIEARLRI HPLRWIAIGL LLALFTGAAA
LPLARPFLTS AFAYAEIPWI GKVPLASAAL FDLGVFSLVV GATALMLLAL AHQSIRGHRR
PSGGRAATPE VSRWN
|
|---|
| |