Gene Rpal_3114 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_3114 
Symbol 
ID6410785 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp3357770 
End bp3358462 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content68% 
IMG OID642712994 
Productthymidylate kinase 
Protein accessionYP_001992095 
Protein GI192291490 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0125] Thymidylate kinase 
TIGRFAM ID[TIGR00041] thymidylate kinase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0311212 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTTCAAA AGAAGCCGAT AAATCGTTCA TTGCGCGGGC GCTTCATCAC CTTCGAAGGC 
GGTGAGGGCG CCGGTAAGTC GACCCAGATC AGGCTGCTGG CGAAGCGGCT GGAGAAGGCG 
CGACTGCGCA CGCTGGTGAC CCGCGAACCG GGCGGCTCGC CGGGCGCCGA GGCGATCCGC 
AGCGCGCTGC TGGCCGGCAT CGGCAAGCTG ATCGGCGGTG CCGATGCCGA AGCCCTGCTG 
TTCGCCGCTG CCCGCGACGA CCATGTCCGC ACCCTGATCG AGCCGGCGCT GGCACGCGGC 
GAATGGGTGC TGTGCGACCG CTTCTACGAT TCGACGCGGG CGTATCAGGG CAAGCTCGGG 
GCCGTCAGTC TGGATCTGCT CAACGCGCTG CAGCAGGTGA CGATCGGCGA CATGAAGCCG 
GACCTCACCG TGATCCTCGA TATTCCGGTC GAGATCGGGC TGGCGCGCGC CGCGGTACGC 
CGCGGCAGCG AAACACCGGA CAGGTTCGAG TCCGAGGCGA TCGACTTCCA CCGCGGACTG 
CGCGAGGTGT TTCGCCAGAT CGCCGCGCAG GAGCCGGAGC GCTGCGCGCT GATCGACGCC 
AATGCCGAGC CGGAGGAGGT CGCCGACCGC ATCTGGCAGG CGGTGCGACT GCGGCTGCTG 
GAGCCAGCTC GTGCCGGGGC GAAATCGGCA TGA
 
Protein sequence
MVQKKPINRS LRGRFITFEG GEGAGKSTQI RLLAKRLEKA RLRTLVTREP GGSPGAEAIR 
SALLAGIGKL IGGADAEALL FAAARDDHVR TLIEPALARG EWVLCDRFYD STRAYQGKLG 
AVSLDLLNAL QQVTIGDMKP DLTVILDIPV EIGLARAAVR RGSETPDRFE SEAIDFHRGL 
REVFRQIAAQ EPERCALIDA NAEPEEVADR IWQAVRLRLL EPARAGAKSA