| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3084 |
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| Symbol | |
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| ID | 6410755 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 3326257 |
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| End bp | 3328551 |
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| Gene Length | 2295 bp |
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| Protein Length | 764 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642712964 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_001992065 |
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| Protein GI | 192291460 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.159276 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCATGT TTCAAACAAC AACAAAAGCG ACAGGGCGAA CTCTTCTGCT GTGCACGGTC
GGCGCAGTCG CGCTGACGAT TCAAATTCCG CAAGGTGCAC ACGCGCAATC CAATCTGCCG
GCCGTCACTG TCGATGCGCC GCGCGCCGAA CGGGCGCGGA CCGCGCGTCC GGTCGCCACC
ACGCGCGCAG GCACGACCCG ACGCATCGCG GCACGCCGTG ATGCACGGCC GCCTGCGCCG
GTGGCGCCGG TGCCTTATGT GACGCCGTCG ACCGGGACAC TGGGCGCGCT GCCGGCAAGC
TATGCGGGCG GCCAGGTCGC CAATGGCGGG CAGGTCGGTT TTCTCGGCAA TCGCAGCCTG
CTCGACACGC CATTCAGCCA GACCAATTAC ACCGCCAAGC TGATGCAGGA TCAGCAGGCA
CGCACCATTC GCGACGTTGT CGCCAACGAT CCGTCGGTCC GGGCGGTGAC GTCGGCCGGC
GGCGGACAGG ACGGCTATTT CATTCGCGGC TTCTACTACG ACGTCGGCGA TCTGGCGCTC
AACGGCATGT ACGGCATGGC GCCGTTCTGG AGCGTTGGCG CCAACTTCGT CGAGCGGGTC
GAGATCCTGA AAGGCCCGAC CGCACTGCTC ACCGGCATCT CGCCGCTCGG CGCGGTCGGC
GGCAGCATCA ATCTCGTCAC CAAGAAGGCG CCGGATTACG ACATCACCCA GCTCACCGCG
ACCTACGCGT CGCGCTCGCA ATTCGGCCTG CAGGCCGATG TGGCGCGGCG CTATGGCGAG
CACAAGGAGT GGGGCGTCCG CTTCAACGGC AGCTACAGCG ACGGCAAGAC GCCGTTCGAC
CGGCAGAGCA GCGAATTCGG CAACGCCGTG CTGGGCCTGG ATTATCGCGG CGAGAACGTC
CGGGTCTCGG CTGATGTCGG TTATCAGGCC AACAATCTGA ATCCGCCGAT CCGGTTCTTC
AGTTTCCAGT CGAGCGTTGT GCCGCTGCCG CCCGCGCCCG CGGCCAACTC CAACGCGATT
CCCGACTGGG CCTACTGGAA GCCGAAGGAC ACCTTCGCCA CGGTGAAGGC CGAGGTCGAC
GTTACGCCCG GGCTGACGGT GTACGGCGCG GCTGGCTATC ATCAGGCCAA GATCGATTTC
AAGTTCCTGT CGCCGACCAT CATCAACCAG GCGGGCGACT ATGGCTCGCG CCCGTTCGCC
GGCGAGCAGA CGTTCACGGC CAAGACCGGT GAAGTCGGGG TACGCGGCGA GGCCGACACC
GGGGCAATCA ACCACAAATT CGTTGTGAAC TACGGCGTGT TCGATCGGCC GAACGAGAAC
TCCTATCTGG CCTCGCCAGG CCTCGTCGGC TCGAACGTCT ACAATTACAA GGCCATCCCG
GAGCCGCTGT TTTCGATTCC GAGCAGCAGC TCGGTCAGCC TGAAGCAGTG GAGCGTCGGT
GCCGCGGATA CGATGTCGAT TCTGAACGGC GGCGTGCAGG CCGTCGTCGG TGTCCGTCGC
CAGCACGTCA GCAACAGCTC GACCGATCTG CTCACCGGCG TCACCACCGG GCAGGACGGC
GCAGCCTGGA GCCCGGCCTA TGCGCTGCTG ATCCGGCCGC TGTCGAACGT GACGCTGTAT
GCCAACTACA TCGAAGGGCT GCAGCCGGGC ACGACCGTGG GTATCGGCTA TGATAATGTC
GGCCAGGTGT TTCCGCCGTT CCAGACCAAG CAGGTCGAGA CCGGCGTGAA GGTCGATTTC
GGCAAGATCA GCGTCACCGG CAGCCTGTTC GAGATCAAGC AGCCGAGCGC GATCGCGTCG
AGTGCAAACG GCGTGTTGAC GCTGTCGGCC GACGGGGAGC AGCGCAACCG TGGCGCCGAG
CTCAACGTGT TCGGTGAACT GGCGCCGGGC CTGCGGCTGC TCGGCGGCGC CACGTTCATG
GACGGGGTGC TGGAAAAGAC CGACAGAGGT CTTAACGACG GCAATCGCGC GCCCGGCGTG
GCACGGGTCA ACGTCAACCT CGGCGCCGAG GTCGACGTGC CTGGCATCGA TGGCTTCACC
CTGACGGGCC GTGTGGTCCA TACCGGCTGG ACCTACGCCA ACGCCGCCAA CACCCAGGTG
CTGCCGGCGT GGACGCGGTT CGATCTTGGG GCGCGCTACA CTTTCCTGTC GCCGTGGAAC
GGCAAGCCGA TCGTGGTGCG GGCTGCGATC GAGAACGTAG AGAACGTTGC CTACTACGCG
TCGTCCTATA GCGGCAGTGC GATCGGTCTC GGCGCGCCGC GCACCTATCT GCTGTCGACG
ACGTTCAACT TCTGA
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| Protein sequence | MGMFQTTTKA TGRTLLLCTV GAVALTIQIP QGAHAQSNLP AVTVDAPRAE RARTARPVAT
TRAGTTRRIA ARRDARPPAP VAPVPYVTPS TGTLGALPAS YAGGQVANGG QVGFLGNRSL
LDTPFSQTNY TAKLMQDQQA RTIRDVVAND PSVRAVTSAG GGQDGYFIRG FYYDVGDLAL
NGMYGMAPFW SVGANFVERV EILKGPTALL TGISPLGAVG GSINLVTKKA PDYDITQLTA
TYASRSQFGL QADVARRYGE HKEWGVRFNG SYSDGKTPFD RQSSEFGNAV LGLDYRGENV
RVSADVGYQA NNLNPPIRFF SFQSSVVPLP PAPAANSNAI PDWAYWKPKD TFATVKAEVD
VTPGLTVYGA AGYHQAKIDF KFLSPTIINQ AGDYGSRPFA GEQTFTAKTG EVGVRGEADT
GAINHKFVVN YGVFDRPNEN SYLASPGLVG SNVYNYKAIP EPLFSIPSSS SVSLKQWSVG
AADTMSILNG GVQAVVGVRR QHVSNSSTDL LTGVTTGQDG AAWSPAYALL IRPLSNVTLY
ANYIEGLQPG TTVGIGYDNV GQVFPPFQTK QVETGVKVDF GKISVTGSLF EIKQPSAIAS
SANGVLTLSA DGEQRNRGAE LNVFGELAPG LRLLGGATFM DGVLEKTDRG LNDGNRAPGV
ARVNVNLGAE VDVPGIDGFT LTGRVVHTGW TYANAANTQV LPAWTRFDLG ARYTFLSPWN
GKPIVVRAAI ENVENVAYYA SSYSGSAIGL GAPRTYLLST TFNF
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