| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_3006 |
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| Symbol | |
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| ID | 6410676 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 3272379 |
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| End bp | 3273548 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 642712885 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_001991987 |
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| Protein GI | 192291382 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.402822 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCTTCC GCATCCTGGA GGAGCAGATC GGCCAGAAGC TCGCTGCCGA AAAGGCGGCC
AAAGCCGGCG ATTCCGCCGA TCGCCGCTTC ATGCAATTGG CGCTGGCGCT CGGCCGGCGC
GGGCAGGGGC GCACCGCGCC CAATCCCGCG GTCGGCGCGG TGCTGGTCAA GGACGGCGTG
ATCGTCGGCC GCGGCTGGAC CCAGGATGGC GGCCGGCCGC ATGCCGAGGT CGAAGCGCTG
CGCCGTGCCG GCGATGCCGC CCGCGGCGCC ACGCTGTACG TCACGCTGGA GCCGTGCTCG
CATCACGGCC GCACGCCGCC TTGCGCCGAT GCGGTGATTG CCGCTGGAAT CGCGCGGGTG
GTGTCTGCGA TCGAAGATCC CAATCCGCTG GTCGCAGGCC AGGGCCACGC GCGGCTGCGC
GCCGCCGGCA TCGCGGTCGA GATCGGCGTC TGCGCCGAGG AGGCCGCGCG CGACCATGCC
GGCCACATCC GCCGCATCCG CGACCGCCGC CCGCATGTGA CGCTGAAGCT TGCGGTGTCC
GCTGACGGTA AGATCGCCGC CGCGGGCCAC AAGCCGGTCG CGATCACTGG CGAGGCCGCC
AACGCCCGCA CCCATCTGCT GCGCGCCCGC TCCGATGCAG TGCTGGTCGG GATCGGCACC
GTGCTGGCCG ATGACCCGGA GCTGACCTGC CGGCTGCCGG GGATGGCGGC GCAATCGCCG
ATCCGGGTGG TGCTCGACCG TGCTTTGCGC ATTCCCGCCG CCAGCAAACT GCTGCATTCG
GCGCGCACCT CGCCGCTGTG GCTGATGGCC TCCGAGATCG CCGAAGCCGC CACGGCTGCT
CGGCTCGGTG CGGCCGGCGC CGAAGTAATT CATGTCGCCG ACTGCGCGGA CACGCCGGGT
CTCGATCTGC CGGCGGTGCT GCACGCGCTG GCCGACAAGG GCGTGACGCG CCTGTTGGTC
GAAGGCGGCG CCCGCGTTGC TGCCTCGCTG GTCACCGGCG AACTCGCTGA CGAAATCTGG
CTGTGGCGCA GCGACAATCC GATCGGTGCC GATGGCATCG ACGCGCTGCA CGACCTGCCG
CTGACGGCAA TGACCGACTC ACCGCACTGG CGCGTCCGCA CGACCGAGCG CGTCGGCGCG
GATACGCTCA CCATTTACGA CCCGAACTAA
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| Protein sequence | MIFRILEEQI GQKLAAEKAA KAGDSADRRF MQLALALGRR GQGRTAPNPA VGAVLVKDGV
IVGRGWTQDG GRPHAEVEAL RRAGDAARGA TLYVTLEPCS HHGRTPPCAD AVIAAGIARV
VSAIEDPNPL VAGQGHARLR AAGIAVEIGV CAEEAARDHA GHIRRIRDRR PHVTLKLAVS
ADGKIAAAGH KPVAITGEAA NARTHLLRAR SDAVLVGIGT VLADDPELTC RLPGMAAQSP
IRVVLDRALR IPAASKLLHS ARTSPLWLMA SEIAEAATAA RLGAAGAEVI HVADCADTPG
LDLPAVLHAL ADKGVTRLLV EGGARVAASL VTGELADEIW LWRSDNPIGA DGIDALHDLP
LTAMTDSPHW RVRTTERVGA DTLTIYDPN
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