| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2985 |
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| Symbol | |
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| ID | 6410655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 3256142 |
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| End bp | 3257044 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642712866 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001991968 |
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| Protein GI | 192291363 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.517253 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAACCGC TTCTATCACT GCTCGGCCAC TATGCTCTGA CTCTTTGCGG CTTCGTTGCT
TCCGGATTCG TCGCCCTGCA GGCTTGGAGC CATTACGAGC GAACGCCCTG GACTCGCGAT
GGCAGGGTGA GTGTGGAGGT GGTCCAGATC GCGCCGGAAG TCTCCGGAAC GATCCGCACC
GTGCCGATAG CCGATAATCA GTATGTGAAA CGTGGCGACG TTCTTTACGA AATCGACTCG
GAGCGGCTTC GGCTGGCCGT GGTGCTGGCG GAGGCTGACG TCGAGGCGAA ATATCAGGAT
ATGCTGGTCC AGCAAGCCAC CGCTCAGCGG AAGCAGCAAC TCAAACTCAA GGACGTGGTC
TCGCAGGAAG CGCTCCAGCA ATCGAGCGGG GCAGCGGCGA TGGCCTCTGC GGCCTATCAG
GCGGCGCTGG CGACACGCGA TCTGGCCAAA CTCAATCTTG CGCGCTCCGT CATTCGCTCC
CCAGTCGACG GGTATGTCAC CAATTTGAAG CTACGGCCCG GCGACTATGC GACCGCCGGC
ATGACAAATG TCGCTATCCT GGACGGGGCG AGTTTCTGGA TCACCGGCTA TTTCGAAGAG
ACGAAACTGC AGCAAATCCG TGTAGGAGCT CCGGCGCGGG TCAAGCTGAT GGGCTTCGAT
CAGCCGGCGG CTGGCCATGT CGAGAGCATC GGTCGGGGCA TCGAGAACAG CAACGAAACA
CCTGGTCGTT TCGGGCTGCC GAATGTGGCG GCGACATTCT CCTGGGTGCG TCTTGCCCAG
CGCATACCGG TCCGCATCCA TCTCGATCGG GTGCCTGCCG GCGTCGAACT GGCTGCGGGC
ATGACCGCAA CGGTCGAGAT CATTCCCCCG GAGGTCGACG CGAATGCGGG GCGGAGGTCG
TGA
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| Protein sequence | MKPLLSLLGH YALTLCGFVA SGFVALQAWS HYERTPWTRD GRVSVEVVQI APEVSGTIRT
VPIADNQYVK RGDVLYEIDS ERLRLAVVLA EADVEAKYQD MLVQQATAQR KQQLKLKDVV
SQEALQQSSG AAAMASAAYQ AALATRDLAK LNLARSVIRS PVDGYVTNLK LRPGDYATAG
MTNVAILDGA SFWITGYFEE TKLQQIRVGA PARVKLMGFD QPAAGHVESI GRGIENSNET
PGRFGLPNVA ATFSWVRLAQ RIPVRIHLDR VPAGVELAAG MTATVEIIPP EVDANAGRRS
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