| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2938 |
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| Symbol | |
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| ID | 6410608 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 3207379 |
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| End bp | 3210897 |
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| Gene Length | 3519 bp |
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| Protein Length | 1172 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642712819 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001991921 |
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| Protein GI | 192291316 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGACTC CGAGCAGGTC TCCCGCGGAG CAGCTGACGC CCGGCAATGC GTTGACCTTC
GCCAACGTCG CCGAGGGCGC CGAGGGGCTG ATCGTCGCCG ATTTGGCCCG CGCGATCGCG
GCCAAGCCGA AGGCGCCGGC TGTCAGTCTC GCGGTGATCT GCCGCGACGG CCCGCGGATG
CAGCAGCTCG CGCGCAGCCT GGAGTTCTTC GCGCCCGACC TCGACGTGTT GCAGTTCCCG
GCCTGGGACT GCCAGCCTTA CGACCGCGTC TCGCCGCACG CTGGCATTCT GGCGCAGCGC
GTCACGACGC TGGCGAAGCT GTCGCGGCTC ACCGGTAGCG ACAAGCCGCT GATCATCCTG
ACCACCGTCA ACGCCGCCGT GCAGCGGGTG CCGGTGCGCG AGATCGTCTC CGCACAGGCG
CTGTCGGTCG CCCCCGGCAA CGTCGTGCCG ATGGAGTCGA TCGTCGCCTG GCTCGAACAC
AACGGCTACA GCCGTGCCTC CACGGTGCGC GAAGCCGGTG AATACGCGGT GCGAGGCGGC
ATCCTCGACC TGTTTCCCGC GGGCCTCGAG CAGCCGGTGC GTTTCGATTT CTTCGGTGAT
CAGCTCGAAT CGATCCGCAC TTTCGATGCC GAAACCCAGC GCACGCTGCA CACCATGCGC
GGCCTGGATC TTGTGCCGGT GTCGGAATTT CAGCTCGTCA CCGAGACCAT CCGCCGCTTC
CGCATGGGCT ACGTCGCCAC CTTCGGTGCG CCGCATCCGG ACGACCAGCT CTACGCCGCG
GTCAGCGAAG GCCGCCGCCA TCCCGGCATG GAGCATTGGC TGCCGCTGTT CCAGGAGCGG
ATGGACACGC TGTTCGATTA CCTGAAGGGA ACGCCGGTCG CGATCGAGCC GCAAAGCGAA
GACGCCGCCC GGGAACGCTT CAAGCAGATT GCCGATTACT ACGATGCCCG CCGCGAAGCG
ATGGATCAGC CCGGCTCCGG CGCGATCTAC AAGCCGCTGC CGCCAGATCA ACTCTATCTT
ACCGACAGCG AGTGGACCGC GCGGCTGGAA GGCGTGCCGT TGGCGCGGCT GACGCCGTTC
GCGCTGCCGG AAGACACTAG CAACGTCATC GACGCCGGTG CGCGGGCCGG GCGTAACTTC
GCGCCGGAGC GGGCGGACTC CAACGTCAAT GTGTTCGAGA CCCTGGTGGC GCACGTCTAT
GCGCTGCAGG CCGCGCGCAA GAAGGTGGTG ATCGCGCTGT GGAGCGAAGG CTCGCGCGAC
CGCATGGCGA GCATGCTGAA GGACCACAAG CTGGTCGCGC TCACCAGCGT CAATTCCTGG
CGCACCGTGC AGGCGACGCC GCGCAACGAA ACTATGCTGG CGGTGGTCGG CCTGGAATCC
GGCTTCGAAA CCGACGCTTT TGCGGTGATT ACCGAGCAGG ATGTGCTCGG CGATCGCCTG
GTGCGGCAGC GCAAGGCCAG CAAGAAACTC GACAACTTCA TCTCCGAAGT CACCAGCCTG
TCGACCGGCG ACATCGTGGT GCATGTCGAG CACGGCATCG GCCGCTTCGT CGGCCTGCAG
ACGCTTGAGG TCGGCGGAGC GCCGCACGAT TGCGTCGAGC TGCACTACGC CAACGACACC
AAGTTGTTCC TGCCGGTCGA GAACATCGAA CTGCTGTCGC GCTACGGCTC CGACGGTACC
TCGGTCGAGC TGGACAAACT CGGCGGCTCG GGCTGGCAGG CGCGCAAGGC CAAGCTGAAG
AACCGCATCC GGCAGATCGC CGGCGAACTG ATCAAGGTCG CTGCAGAGCG GCATCTGCGC
GAGGCGCCGA AGCTGCCGAT CCAGCCGCAG CTCTACGACG AGTTCTGCGC GCGCTTCCCC
TACGACGAGA CCGAGGATCA GCTTGCTGCC ATCAATGCGG CGCTCGGCGA TCTGGAGAAG
GGCACGCCGA TGGACCGCCT GGTCTGCGGC GACGTCGGTT TCGGCAAGAC CGAAGTGGCG
CTGCGCGCGG CGTTCGCCGT GGCGCTCGAC GGCAAGCAGG TGGCGGTCGT GGTGCCGACC
ACGCTGCTGG CGCGGCAGCA CGCCAAGACC TTCACCGAGC GGTTCCGCGG CTTCCCGGTC
AATGTCGGCC AAGCCTCGCG TCTGGTCTCG ACCAAGGAGC TGTCGCAGGT CAAGAAGGGC
ATCGCTGACG GCACGCTCGA CATCGTCGTC GGCACCCATG CGCTGCTGGG CAAGTCGATC
AAGTTCAAGG ATCTCGGCCT TGTGATTGTC GACGAGGAGC AGCATTTCGG CGTCACCCAC
AAGGAGAAGC TGAAGCAGCT GCGCTCTGAG GTCCACGTGT TGACGCTGAG CGCGACGCCG
ATCCCGCGCA CGCTGCAGCT CGCCATGACC GGGGTGCGCG ACCTGTCGAT CATTGCCTCG
CCGCCGGTCG ATCGTCTCGC GGTGCGCACC TTCGTTGCCC CGCACGATCC GCTGATGATC
CGCGAGGCGT TGCTGCGCGA GCGCTATCGC GGCGGTCAGG CGTTCTATGT CGTGCCGCGG
ATCGACGATC TCGCAGAGGT GAAGGACTTC CTCGACAAGC ACGTGCCGGA GATGAAGGTC
GCGGTCGCGC ACGGCCAGAT GCCGCCGGCG GTGATCGAGG ACATCATGTC GGCGTTCTAC
GACGGCAAGT TCGACATCCT GCTATCGACC ACGATCGTCG AATCCGGTCT CGACATTCCG
AACGCCAATA CGCTGATCGT GCACCGCGCC GACATGTTCG GCCTGGCGCA ATTGTATCAG
CTCCGCGGTC GCGTCGGCCG GTCGAAACTG CGCGCCTATG CGCTGTTTAC GCTGCCGCAG
CACAACATCA CCGCGCAGGC GGAGCGACGG CTGAAGGTGC TGCAATCGCT GGAAACGCTG
GGCGCAGGCT TCCAGCTCGC CTCGCACGAC CTCGACATTC GCGGCGCCGG CAACCTGCTC
GGCGAGGAAC AGTCCGGCCA CATCAAGGAA GTCGGCTTCG AGCTGTATCA GCAGATGCTG
GAGGAGGCGA TCACCAACCT CAAGGCCGGC ATTGTCGACG AACCGGTCGC CGATCGCTGG
TCGCCGCAGA TCACCATCGG CATGCCGGTG CTGATCCCGG ACGACTTCGT TGCCGATCTA
TCGGTGCGGC TGTCGCTGTA CCGGCGGCTC GCCGATCTCG ACACCGACGA GGAGATCGAC
AATTTCGCCG CCGAGCTCCG CGACCGTTTC GGGCCGCTGC CGGACGAGGT GCGCTATCTG
TTCAAGATCG CGGCCATCAA GGCGTATTGC CGTCGTGCCA ATGTCGAGAA GGTCGACGCC
GGCCCGAAGG GCGTGGTCAT CACCTTCCGC GACAACGCCT TCGCGCAACC GGACAAGCTG
GTGTTCTTCA TCAAGCGCCA CGGCAACGCG GCCAAGGTGC GGCCCGACAT GAAGGTGGTG
TTCTTCCAGG TCTGGGAGAC GCCGGAAGAG CGACTGATGG GAACGACCGA CATCCTCAAG
CAGCTCGCGG ACCTAGCCGA GAACCGCAAG GCGGCGTGA
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| Protein sequence | MKTPSRSPAE QLTPGNALTF ANVAEGAEGL IVADLARAIA AKPKAPAVSL AVICRDGPRM
QQLARSLEFF APDLDVLQFP AWDCQPYDRV SPHAGILAQR VTTLAKLSRL TGSDKPLIIL
TTVNAAVQRV PVREIVSAQA LSVAPGNVVP MESIVAWLEH NGYSRASTVR EAGEYAVRGG
ILDLFPAGLE QPVRFDFFGD QLESIRTFDA ETQRTLHTMR GLDLVPVSEF QLVTETIRRF
RMGYVATFGA PHPDDQLYAA VSEGRRHPGM EHWLPLFQER MDTLFDYLKG TPVAIEPQSE
DAARERFKQI ADYYDARREA MDQPGSGAIY KPLPPDQLYL TDSEWTARLE GVPLARLTPF
ALPEDTSNVI DAGARAGRNF APERADSNVN VFETLVAHVY ALQAARKKVV IALWSEGSRD
RMASMLKDHK LVALTSVNSW RTVQATPRNE TMLAVVGLES GFETDAFAVI TEQDVLGDRL
VRQRKASKKL DNFISEVTSL STGDIVVHVE HGIGRFVGLQ TLEVGGAPHD CVELHYANDT
KLFLPVENIE LLSRYGSDGT SVELDKLGGS GWQARKAKLK NRIRQIAGEL IKVAAERHLR
EAPKLPIQPQ LYDEFCARFP YDETEDQLAA INAALGDLEK GTPMDRLVCG DVGFGKTEVA
LRAAFAVALD GKQVAVVVPT TLLARQHAKT FTERFRGFPV NVGQASRLVS TKELSQVKKG
IADGTLDIVV GTHALLGKSI KFKDLGLVIV DEEQHFGVTH KEKLKQLRSE VHVLTLSATP
IPRTLQLAMT GVRDLSIIAS PPVDRLAVRT FVAPHDPLMI REALLRERYR GGQAFYVVPR
IDDLAEVKDF LDKHVPEMKV AVAHGQMPPA VIEDIMSAFY DGKFDILLST TIVESGLDIP
NANTLIVHRA DMFGLAQLYQ LRGRVGRSKL RAYALFTLPQ HNITAQAERR LKVLQSLETL
GAGFQLASHD LDIRGAGNLL GEEQSGHIKE VGFELYQQML EEAITNLKAG IVDEPVADRW
SPQITIGMPV LIPDDFVADL SVRLSLYRRL ADLDTDEEID NFAAELRDRF GPLPDEVRYL
FKIAAIKAYC RRANVEKVDA GPKGVVITFR DNAFAQPDKL VFFIKRHGNA AKVRPDMKVV
FFQVWETPEE RLMGTTDILK QLADLAENRK AA
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