| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2928 |
|---|
| Symbol | |
|---|
| ID | 6410598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 3192962 |
|---|
| End bp | 3195796 |
|---|
| Gene Length | 2835 bp |
|---|
| Protein Length | 944 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642712809 |
|---|
| Product | glycosyl transferase family 2 |
|---|
| Protein accession | YP_001991911 |
|---|
| Protein GI | 192291306 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1215] Glycosyltransferases, probably involved in cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.904629 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCTG TCGTCGCCGT TCTGCTTTTC GTCACCGCCG CTCACGCCGG GCTCTGGGGC
CTCCTTCGGG AGAAACAACA AGCCGCCGAC TTCACCGGCA TCCTGCCGAG CGTGTCCTAC
GCGCCGTTCG ATGGCTCCGG CCATCCGGAC GTCGACAACT TCCCGACCGC TGAACGGATC
CGCTCCGACC TGAAAAAGCT GTCCGCGCAG ACCCGCGCCA TCCGTCTGTA CTCGTCGACC
GGCGGCCCCG AGATGGTACC GCCGATCGCC AATGAGTTCG GCCTGAAGGT CAATGTCGGC
GCCTGGATCG ACAAGGACGT CACCCGCAAC GAGCGCGAGA TCCAGGCCGC GATCGACCTC
GCCAAGCACA ACGCCAATGT CAGCGGCATC GTGGTCGGCA ACGAAACGGT GTATCGCGGC
GATCAGATCC CGTTGGAAAA TCTCGGGCTG AGCGAGGAAG AGCGCTACCG GCTGGTGGCC
GAAGAGAACC AGCGGGTTCG CGACGCTGAA GCCCAGCCGG CCGACAAGCG CGACGAAGCG
GTGCGCTGGG CCACGGCCGA AAACAACGTC CGCCGGTTGA CCCGGCTAAT CCAGCGCGTG
AAGTCTCAGG TCAAAGCGCC GGTCACCTCT GGCGAAATCT GGAACATATG GCTCGAGCAT
CCCGAGCTCG CCTCATCGGT CGACTTCATC GCCGCGCACG TCCTGCCTTA CTGGGAAGGC
TTCTCCGCCA AGCAGGCGGT CGATCAGGCG ATGATCATCT ACCAGAAGCT GCGCGAGGCC
TTCCCGGGCA AGCGCATCGT GATCGCCGAA TTCGGCTGGC CGAGCGCCGG CTATAACCGC
AAGGCTGCGG TGCCCGGTCA GTTCGAACAG GCGGTGACGC TGCGCAACTT CGTCAGCCGC
GCCGACTCGA TCGGCATGGA ATACAACATC GTTGAAGCGA TCGATCAGCC GTGGAAGTTC
TTCGAAGGCG GCGTCGGTCC GTATTGGGGC TTCCTCGACG CCTCTCGCCA GCCGAAGTTC
GCCTGGACCG GCCCGGTGGT CGATCCGAAC TACTGGAAGC TCGCCGGCAT CGCGTTGCTG
GTCGGCATCC TGCTATCGCT GCCAATCCTG CAGCTCGCCG CCCCGACCGC GATGCAGACG
CTGCTGCTGT CGGCCGCGGC GCACGGCGCC GGCGCCTGGG CCGCGACGGT GTTCGCCTAT
TGGAACGGGC ACTACTTCCT GTTCGGCTCG GCCTTCGCGC TGACGCTTGG CATGATCCTG
CTGATCCCGC TGGTGGCAAT CGCCTTGGCG CGGATCGAGG AAATCTCGGC CGTGGCCTTC
GGCCGCAAAC CGCGCCGGCT GATCACCCGT GCCCTCACCG ACGCTCAGGA AACCAAGCGT
GCCGCAGCGA TCGCCAGCGG CGAGCCGGTC AATGTTCCGA AGGTCTCGAT CCACGTTCCG
GCCTATTTCG AACCGCCGGA GATGCTGAAG CAGACCCTGG ATGCGCTGGC TCGGCTCGAT
TACCCGAATT TCGAAGTCGT GGTGATCATC AACAATACAC CTGATCCGGC TTTCACCCAG
CCGATCCAGG ATCACTGCCG CGAGCTCGGC GAACGCTTCA AGTTCATCAA CGCCGAGAAG
GTCAAAGGCT TCAAGGCTGG CGCGCTGCGG ATCGCGATGG AGCGCACCGC GGTCGATGCA
GAGATCATCG GCATCATCGA CGCCGACTAT GTGGTGACAC CGGACTGGCT GAAGGACCTG
GTGCCTGCGT TCGACGATCC GCGCGTCGGC CTGGTGCAGG CGCCGCAGGA ACACCGCGAC
GGCGACCGCT CGTTGATGCA CTACATCATG AACGGCGAAT ATGCCGGGTT CTTCGACATC
GGCATGGTGC AGCGCAACGA ATACAACGGC ATCATCGTGC ACGGCACGAT GTGCCTGATC
CGCCGCGCAG CGATGGACAT GGCCGGCGGC TGGTCGAGCG ACACCATCTG CGAAGACTCC
GATCTCGGCC TCGAGATCAT GGAGCACGGC TGGCTCACCC ACTACACCAA CACCCGCTAC
GGCTACGGCC TGCTGCCGGA CACCTACGAG GCGTTCAAGA AGCAGCGGCA TCGCTGGGCC
TATGGCGGCT TCCAGATCAT CAAGAAGCAC TGGCGCCGAT TCCTGCCCGG CAACAGCCGC
CTCAGCCGCG ACCAGCGCCG CGAATTTGGC CTCGGCTGGC TGAACTGGCT CGGCGCCGAA
AGCCTCGGCG TGGTGGTGGC GATCCTCAAC CTGATCTGGG TCCCGATCGT CGCGTTCGCC
GACATCGCGA TTCCCGACAA GATCCTGACC TTGCCGATCA TCGCCTCCTT CATCGTCACG
CTGGCGCACT TCCTGGTGCT GTACCGGCTG CGGGTGAAGA TCGGCGTACC GCAGATGCTC
GGCGCGATGA TCGCGGCGAT GTCGGTGCAA TGGACTGTGT CGCGCGCCGT CGCCCAGGGC
CTGATCACCG AGCACCTCGC CTTCGCCCGC ACCTCCAAGG GCGGCCTGAC GATGATGTCG
GTCGAATTCC AGGCGTTCTG GGAAGCGGTC ATCGGCGTGC TGCTGCTGAT CGGTGCCGGG
ATCCTGGTGG TCTCCAACAG CAACATCCAG ATCACCGAGA TCTACATCTT CGCCGGCGTC
TTGGTGCTGC AGAGCCTTCC GTTCCTGGCG GCGGTAGCGA TCGCGATTCT GGAGAACTCC
CGAATCAATC AGTTCGGCTG GTGGACCGCG ACCGCGGTGC GGACTGCCGA ATTGATCGGC
CTGCGCCCGG TGGCGCTGCC GACCCCGATC CCGGCGCCGC AGAAGGTCGC CTCGGAGCTT
CACCGCGACG CGTAA
|
|---|
| Protein sequence | MRAVVAVLLF VTAAHAGLWG LLREKQQAAD FTGILPSVSY APFDGSGHPD VDNFPTAERI
RSDLKKLSAQ TRAIRLYSST GGPEMVPPIA NEFGLKVNVG AWIDKDVTRN EREIQAAIDL
AKHNANVSGI VVGNETVYRG DQIPLENLGL SEEERYRLVA EENQRVRDAE AQPADKRDEA
VRWATAENNV RRLTRLIQRV KSQVKAPVTS GEIWNIWLEH PELASSVDFI AAHVLPYWEG
FSAKQAVDQA MIIYQKLREA FPGKRIVIAE FGWPSAGYNR KAAVPGQFEQ AVTLRNFVSR
ADSIGMEYNI VEAIDQPWKF FEGGVGPYWG FLDASRQPKF AWTGPVVDPN YWKLAGIALL
VGILLSLPIL QLAAPTAMQT LLLSAAAHGA GAWAATVFAY WNGHYFLFGS AFALTLGMIL
LIPLVAIALA RIEEISAVAF GRKPRRLITR ALTDAQETKR AAAIASGEPV NVPKVSIHVP
AYFEPPEMLK QTLDALARLD YPNFEVVVII NNTPDPAFTQ PIQDHCRELG ERFKFINAEK
VKGFKAGALR IAMERTAVDA EIIGIIDADY VVTPDWLKDL VPAFDDPRVG LVQAPQEHRD
GDRSLMHYIM NGEYAGFFDI GMVQRNEYNG IIVHGTMCLI RRAAMDMAGG WSSDTICEDS
DLGLEIMEHG WLTHYTNTRY GYGLLPDTYE AFKKQRHRWA YGGFQIIKKH WRRFLPGNSR
LSRDQRREFG LGWLNWLGAE SLGVVVAILN LIWVPIVAFA DIAIPDKILT LPIIASFIVT
LAHFLVLYRL RVKIGVPQML GAMIAAMSVQ WTVSRAVAQG LITEHLAFAR TSKGGLTMMS
VEFQAFWEAV IGVLLLIGAG ILVVSNSNIQ ITEIYIFAGV LVLQSLPFLA AVAIAILENS
RINQFGWWTA TAVRTAELIG LRPVALPTPI PAPQKVASEL HRDA
|
|---|
| |