Gene Rpal_2917 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_2917 
Symbol 
ID6410586 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand- 
Start bp3184031 
End bp3185008 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content64% 
IMG OID642712797 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001991900 
Protein GI192291295 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0648374 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTATCC TGAACCTCGC GGGGCGGCGG CTCGCCGCCT CGATCCCGAC CTTGTTTCTT 
ATCCTGATCG GCATCTTCCT GCTCCTGCAA TTCGCGCCAG GCGACACCGT CGACGCGATG 
ATGGCACAGA TGGGCGGCGG CGACGCCGCG ACCGCGCGCG AACTTCGTCA GTTCTACGGG 
CTCGATCTGT CGATCCCGAT GCAGCTCGGC CACTATCTGT GGCGGCTGGT GCGGTTCGAT 
CTCGGCTTCT CGTCGATCTA TGGCAAGCCG GTCGCGAGCG TGATCCTCGA ACGGCTGCCG 
CCGACGCTGC TGCTGATGAC CGCGTCGCTC TCGTTCGCGT TCTTTGCTGG CCTCGTGCTT 
GGCGTGGTCG CCGCACGTGG CGTCAACAAG TGGCCGGACA CGCTGATTTC GACGCTCGGC 
CTGATCTTCT ACGCGACGCC CTCGTTCTGG TTCGGGCTCA TGGCAATCGT GGTGTTCTCG 
GTCTATCTGC AATGGCTGCC GGCAGGCGGC TTCGAGGACA TCGGCCAAGC GGCGACCGGC 
CTCGCGCGAA CGCTCGATAT CGCGGCACAT CTGGTGCTCC CGGCGCTGAC GCTTGGGCTG 
ATCTTCCTGG CGATCTACTT GCGCATCATG CGGGCCTCAA TGCTCGAAGT GCTCAATCTC 
GATTTCGTCC GGACCGCGCG CGCCAAGGGA CTCGACGAGA CCCGTGTCGT CGTCCGCCAC 
GTGCTCCGCA ACGCATTGCT GCCGATGGTG ACTCTGATCG GCCTGCAGGC TGGCACCATG 
CTGGGTGGCT CGGTGGTCGT CGAGAGTGTA TTCTCGCTGC CGGGCCTCGG CCGGCTTGCA 
TATGAATCGG TCGTGCAACG TGACCTCAAT ACTCTGCTTG GTATCGTATT CGTCTCGGCG 
CTCCTGGTGA TCGCCGTCAA CTTCCTGGTC GACCTGCTCT ACGCCCGCCT CGACCCGCGC 
ATCTCGGCGG GGGCTTGA
 
Protein sequence
MRILNLAGRR LAASIPTLFL ILIGIFLLLQ FAPGDTVDAM MAQMGGGDAA TARELRQFYG 
LDLSIPMQLG HYLWRLVRFD LGFSSIYGKP VASVILERLP PTLLLMTASL SFAFFAGLVL 
GVVAARGVNK WPDTLISTLG LIFYATPSFW FGLMAIVVFS VYLQWLPAGG FEDIGQAATG 
LARTLDIAAH LVLPALTLGL IFLAIYLRIM RASMLEVLNL DFVRTARAKG LDETRVVVRH 
VLRNALLPMV TLIGLQAGTM LGGSVVVESV FSLPGLGRLA YESVVQRDLN TLLGIVFVSA 
LLVIAVNFLV DLLYARLDPR ISAGA