| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2862 |
|---|
| Symbol | |
|---|
| ID | 6410531 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 3121485 |
|---|
| End bp | 3122657 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642712742 |
|---|
| Product | signal transduction histidine kinase, nitrogen specific, NtrB |
|---|
| Protein accession | YP_001991845 |
|---|
| Protein GI | 192291240 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3852] Signal transduction histidine kinase, nitrogen specific |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCCA TTGTCGAACC GCGCCGGGCT CAGCCGACCG ACAGCGATGC GATCCTCAAT
GCGTTGCCGA ATCCTGTGCT GCTGGTCGGT CCCGACGGCA AAATCGTGGA CGCCAACATG
GCGGCGGAAT CATTTTTTGA GATTTCGACG CAATTGCTGC GACGGCAGTC GCTGACCGAC
CTGGTGCCGT TCGGCAGCCC GCTGCTGGCG CTGATCGAGC AGGTGCGCGT CGGGCATTCG
CCGGTCAATG AATACAAGGT CGATCTCGGC ACGCCGCGGA TCGGCGCCGA CCGCCAGGTC
GATCTGCACG TCGCGCCGCT CAACGAACGG CCCGGCCATA TCGTGGTGAT GCTGCAGGAG
CGCACCATCG CCGATAAGAT GGACCGCCAG CTCACGCATC GCAGCGCGGC GCGCTCGGTG
ATCGCGCTCG CCGCCATGCT GGCGCACGAG ATCAAGAATC CGCTGTCCGG CATCCGCGGC
GCGGCGCAAC TGCTGGAGCA GCAGGCCTCC GCCGAAGACC GGATGCTGAC CCGGCTGATC
TGCGACGAAG CCGACCGCAT CGTCACGCTG GTCGACCGCA TGGAAGTGTT CGGCGACGAC
CGCCCGGTGG CGCGCGGCCC GGTGAACATC CACTCGGTGC TGGATCACGT GAAGCGGCTG
GCGCAGTCGG GCTTTGCCCG CAACATCAAG TTCATCGAGG ACTACGACCC GTCGCTGCCG
CCGGTGCTCG CCAATCAGGA TCAGCTGATC CAAGTGTTCC TCAATCTGGT GAAGAACGCT
GCCGAGGCTG TGGTCGATCT CGGCTCCGAT GGCGAGATCC AACTCACCAC CGCGTTCCGC
CCCGGCGTCC GGCTGTCGGT GCCGGGCAAG AAGACGCGGG TGTCGCTGCC GCTGGAATTC
TGCGTGCGGG ACAACGGTCC CGGCGTTCCC GAAGATCTGC TGCCGAACCT GTTCGATCCG
TTCGTCACCA CCAAGCCGTC CGGCTCCGGC CTCGGTCTTG CATTGGTGGC GAAGATTGTC
GGCGATCACG GCGGCATCAT CGAGTGTGAA TCGCAGCCGC GCAAAACCAC TTTCCGGGTG
CTGATGCCAA TGTTCAACAC CGCCAAGGCC CTTCAATCCC CGAACGGCGA GGACGCGCCG
GCGTCGTCCG ATGCCTCACA GACTGCAAGA TGA
|
|---|
| Protein sequence | MNAIVEPRRA QPTDSDAILN ALPNPVLLVG PDGKIVDANM AAESFFEIST QLLRRQSLTD
LVPFGSPLLA LIEQVRVGHS PVNEYKVDLG TPRIGADRQV DLHVAPLNER PGHIVVMLQE
RTIADKMDRQ LTHRSAARSV IALAAMLAHE IKNPLSGIRG AAQLLEQQAS AEDRMLTRLI
CDEADRIVTL VDRMEVFGDD RPVARGPVNI HSVLDHVKRL AQSGFARNIK FIEDYDPSLP
PVLANQDQLI QVFLNLVKNA AEAVVDLGSD GEIQLTTAFR PGVRLSVPGK KTRVSLPLEF
CVRDNGPGVP EDLLPNLFDP FVTTKPSGSG LGLALVAKIV GDHGGIIECE SQPRKTTFRV
LMPMFNTAKA LQSPNGEDAP ASSDASQTAR
|
|---|
| |