| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2824 |
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| Symbol | |
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| ID | 6410491 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 3073931 |
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| End bp | 3075973 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642712703 |
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| Product | penicillin-binding protein 1C |
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| Protein accession | YP_001991808 |
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| Protein GI | 192291203 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCGGCGG TTGCGGTCGT TGCGATGGTC GGCGGGCTTA TCGCCTACGC CATCGCGCTC
GGCCCGCTGC CGCTCGACGA GGCGCGGCAG ACCTCGGTGA CGGTGGTCGA CCGCCACGGC
AAGCTGCTGC GCGCTTATGC GATGGCCGAC GGGCGCTGGC GGTTGCCGGT GGACGCGTCG
ACCGAAGTCG ACCCACGCTA CCTCAAGCTG CTGTTCGCCT ATGAGGACAA GCGGTTCTAT
CAGCACCACG GGGTCGATCC GCTGGCGGTC GGGCGTGCCG CGCTGCAGCT CATTAGCCAG
GGGCGGATCG TCTCGGGCGG TTCGACCATC ACCATGCAGC TCGCGCGGCT GATGGAGCCG
CGACGGCAGC GATCGCTGAG CGCCAAGCTG CGGCAGATGG TGCGGGCGGT CGAGTTGGAG
CATCGGCTGT CGAAGCAGCA GATCCTCGAC CTGTATCTGG CCCTGGCGCC GTATGGCGGC
AATCTCGAAG GCATCCGCGC CGCGTCGATC GCCTATTTCG GCAAGGAGCC GAAGCGGCTG
ACGCTGGCGG AATCGGCGCT GCTGGTGGCG CTGCCGCAGT CGCCCGAGCA CCGCCGGCTC
GATCGCCATC CGGACGTCGC CCGAGAAGCG CGCGACCGCG TGCTGGCGCG GATGGTCGAG
GATGGCGTCG TCAGCGCCGA GGACGCGGCG CAGGCGAGGG CGGTGCCGGT GCTGCGCCAA
CGCAAGCCGA TGCCGATCCT GGCGCCGCAT TCCGCCGATC AGGCGGTGGC GGCCGACAAG
GACGCGCCGC TGATCCGGCT CACCCTCGAT GCCGGCCTGC AGCGCGCCCT CGAAACGCTG
GCGCGCGACC GCGCCGCTGC GCTCGGCCCC GATATTTCGA TCGGCCTGGT GGCGGTCGAC
AATGCCAGCG GCGAGGTGCT CGCCCATGTC GGCTCGGCCG ACTATTTCGA CGACCGCCGC
GCCGGGCAGG TCGACATGAC CCGTGCGGTG CGGTCGCCCG GTTCCACCTT GAAGCCGTTC
ATCTATGGGC TCGCCTTCGA GGACGGATTC GTTCATCCGG AGAGCCTGAT CGACGACCGG
CCGGTGCGGT TCGGCGCCTA TGCGCCCGAG AACTTCGACA TGACGTTCCA GGGCACGGTG
CCGGTGCGCA AGGCGCTGCA ACTGTCGCTC AATGTTCCGG CGATCGAACT GCTCGACCGG
GTCGGGGCGG CGCGGCTGGC GTCGCGGCTG AAGCAGGCCG GCACCGAACT GGTGCTGCCC
AGGGACGAAG CGCCGGGTCT GGCGATGGGG CTGGGCGGCG TCGGCATCAA GCTGATCGAT
CTGGTGCAGC TCTACAGCGG GCTGCCGCGC CTCGGCAGCG TTCTGCCGTT ACGCGAAATT
GCAAGTTCCA GCAACGACAA GCGAGAGACT CTGCGCCTGA TGGATCAAGT CGCGGCCTGG
CAAGTCGGCA GCGTTCTGCT CGGCACCCCG CCGCCGGAGA ATGCGGTGCG CAACCAGATC
GCGTTCAAGA CCGGCACATC CTATGGCTAC CGCGACGCTT GGTCGGTCGG GTTCGATGGC
CGGATGACAA TCGGCGTTTG GGTCGGGCGG CCGGATGGTG CCCCGATCCC CGGCATGATC
GGCCGTGTCG CCGCGGCTCC AGTGCTGTTC GACGCATTCG CCCGCAGCGG CCATCTCCGC
GCACCATTGC CGAAGGCGCC GCGGGGAACA CTGGTCGCCA GTAATGCCAA GCTGCCGCTG
CCGCTCCGGC GATTTCGGCC GGCGGGTGAT CTGGTGCGAA CCGGCGACGA CAAGGCGCTG
CGCATCCAGT TCCCGCTGAA CGGATCGCGG ATCGATGCGA TCAGTGAAGC CTCGGTCGGC
GCGCTGCCGG TCAAGGTCGC CGGCGGGGTG CTGCCGATGA CCGTGATGGT CAATGGATTG
TCGGTCGGCG AAATCGACGG GCGGCGGCAA CGGCTGATCG CGCCGCCCGG TCCGGGCTTC
GTCCGGCTCA CCGTGATGGA CGCGGTTGGC GCCGCGGACA CAGTTGTCGT CAGAATTCAA
TAG
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| Protein sequence | MSAVAVVAMV GGLIAYAIAL GPLPLDEARQ TSVTVVDRHG KLLRAYAMAD GRWRLPVDAS
TEVDPRYLKL LFAYEDKRFY QHHGVDPLAV GRAALQLISQ GRIVSGGSTI TMQLARLMEP
RRQRSLSAKL RQMVRAVELE HRLSKQQILD LYLALAPYGG NLEGIRAASI AYFGKEPKRL
TLAESALLVA LPQSPEHRRL DRHPDVAREA RDRVLARMVE DGVVSAEDAA QARAVPVLRQ
RKPMPILAPH SADQAVAADK DAPLIRLTLD AGLQRALETL ARDRAAALGP DISIGLVAVD
NASGEVLAHV GSADYFDDRR AGQVDMTRAV RSPGSTLKPF IYGLAFEDGF VHPESLIDDR
PVRFGAYAPE NFDMTFQGTV PVRKALQLSL NVPAIELLDR VGAARLASRL KQAGTELVLP
RDEAPGLAMG LGGVGIKLID LVQLYSGLPR LGSVLPLREI ASSSNDKRET LRLMDQVAAW
QVGSVLLGTP PPENAVRNQI AFKTGTSYGY RDAWSVGFDG RMTIGVWVGR PDGAPIPGMI
GRVAAAPVLF DAFARSGHLR APLPKAPRGT LVASNAKLPL PLRRFRPAGD LVRTGDDKAL
RIQFPLNGSR IDAISEASVG ALPVKVAGGV LPMTVMVNGL SVGEIDGRRQ RLIAPPGPGF
VRLTVMDAVG AADTVVVRIQ
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