Gene Rpal_2823 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_2823 
Symbol 
ID6410490 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp3068568 
End bp3073781 
Gene Length5214 bp 
Protein Length1737 aa 
Translation table11 
GC content69% 
IMG OID642712702 
Productalpha-2-macroglobulin domain protein 
Protein accessionYP_001991807 
Protein GI192291202 
COG category[R] General function prediction only 
COG ID[COG2373] Large extracellular alpha-helical protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCGGTC TGGTTCGCGC CCTCACGCTT TGCGCCGGAT TGGCGCTCGG GCTCGCATCG 
GCTCAGGCGG CCGACAAGGC GTTCCAGCGC GACGAGCTGG CGGACGCCGC GATCAAGCTC
GAAGCCCAGA TCAAGAGCGA GGCGGCGGCC ACCAATAAGC CGACCGCGGT GCTGCGCAGC
GACGCCGACG CCGCGTTCAA GCGCGGCGAC TACCGCGGCG GGCTGCAGAT TCTGGGGCAG
ATCGCGGCGC TCGATCCGGC CGACGGCGAC AACTGGTTGC GGCTGGCCCG CACCGTGCTG
CAGATCAAGG CCGCCACCAG TTCCGAACAG ACCTTCCTGC GCGAGCGCGC CACCACCGCG
GCCTATATCG CCTACCAGCG CGCCAAGAGC CCGCGCGAGG AGGCCGACGC GCTGGCGCTG
CTCGGCCGGG CGATGGCCGA CCGCAGCCTG TGGCGGCCGG CGCTGGATTC CCTGCGGCTG
TCGCTGGATC TGCGTGAGGT CGCCGACATC CGCGGCCAAT ATGAGAAGCT GCGCGCGGAG
CATGGCTTCC GGCTGCTCGA TTACACGGTG GACTCGGATT CGGCGTCGCC GCGGGTGTGC
TTCCAGTTCT CCGAGGAACT CGCCAAGCGC ACCGACTTCG CGCCCTATGT GACGCTGGCC
GGCACCGACA AGCCGGCGAT CAGCGCCGAG GAGCGCCAGC TCTGTGTCGA GGGGGTGAAG
CACGGCGAGC GCTACAACAT CAATCTGCGC GCCGGCCTGC CGTCGACCGT GAAAGAGGCG
CTGGCGAAGT CGGCCGAGTT CAACGTCTAT GTCCGCGACC GCAAGCCGCT GGTGCGCTTC
ACCGGCAGAG CCTATGTGCT GCCGCGCACC GGCCAGCGCG GTATTCCGCT GGTCAGCGTC
AACACCCCGA CCGTGGCGGT GCAGGTGTTC CGGATCGGCG ACCGCAACCT GATCAACACC
GTGGTCGACA GCGACTTCCA GCGGACGCTG AGCCGCTACC AGCTCAGCGA TCTCGGCAAC
GAGCGCGGCG CCAAGGTGTG GACGGGTGAG CTCGACACCG CGACCGCGGC GCTGAATGCC
GACGTCACCA CCGCGTTCCC GGTCGACCAG GTGCTCGGCG ACCTGCAGCC CGGCGTCTAT
GTGATGACCG CCGCGCCCAA GGGCCCGACC GCCAATTCCG ACGATGACGG CCAGCTCGCC
ACCCAGTGGT TCATCGTTTC CGATCTCGGC CTGACCGCGT TCTCCGGCAA CGACGGCGTC
CACGTCTTCG TCAATTCGCT GGCCTCGACC GATCCGCTCG CCAATACCGA GGTGCGGCTG
ATCGCGCGCA ACAACGAGGT GCTGGCGACG CGCAAGACCG ACGCTTCCGG CCACGTGCTG
TTCGAAGCCG GTCTGGCGCG CGGCGAGGGC GGGCTGTCGC CGGCGCTGCT GACCGCGTCC
AGCGACAAGG CCGACTATGC CTTCCTCAGC CTGAAGACCA ACGCCTTCGA CCTGTCGGAC
CGCGGCGTCT CCGGGCGTGC GGTGCCGGCC GGCGCCGACG CCTTCGTCTA TGCCGAGCGC
GGCGTGTATC GCTCCGGCGA GACCGTCCAC CTCACCGCGC TGCTGCGCGA CGGGCAGGGC
GTGGCGATGA CCGCCAGTCC GATGACGCTG GTGGTGGAGC GGCCGGACGG CGTCGAATAC
CGCCGCGCTG TGCTGTCCGA TCAGGGCGCC GGTGGCCGCA GCCTCGATGT CGCGCTCAAT
TCGGCGGTGC CGACCGGTAC CTGGCGGGTC CGCGCGTTCA CTGATCCGAA GGGCGCCAGT
GTCGGCGAAA CCACCTTCAT GGTCGAAGAC TATGTTCCCG ATCGGATCGA ATTCGACATT
TCCACCAAGG ACAAGGCGAT CAAAGCTGAT GCTCCTGTGG AACTTAAGGT CGATGGCCGT
TTCCTGTATG GCGCGCCGGC CTCGGCGCTC CAGATCGAAG GCGATCTGCT GGTGGCGCCG
GCCGAAGGGC GGCCCGGCTA TGCCGGCTAT CAGTTCGGCG TCGCCGACGA AGAGACCACC
AGCAACGAGC GCACGCCGCT CGAAAACCTG CCCGAGACTG ACGCCGACGG CGCCGCCACC
TTCGAATTGA GCCTGCCGAA GCCGCCGTCG TCGACCCGGC CGCAGGAGGC GCAGATCTTC
GTGCGGATGG CGGAGGCCGG CGGCCGCGCG GTCGAGCGCA AGCTGGTTCT GCCGATCGCG
CCGGCGGCGG CGATGATCGG CGTCAAGCCG CTGTTCGCCG ACCGCAACGT CGCCGAAGGC
GATGTCGCCA AATTCGATGT CGCCTTTGTG GCGCCGGACG GCACCTCGCT GCCGCGCAGC
GGCCTGCGTT ACGAGCTGCT CAAGATCGAG TCGCGTTATC AGTGGTACCG GCAGAATTCG
TCCTGGGATT ACGAGCCGGT GAAGTCGACC AAGCGGGTTG CCGACGGCGA CCTGTCGATC
AAGGCCGGCG AGCCGGCGCG GCTGCAGTTC AACCCGGAGC CCGGCCGCTA CCGGCTCGAC
GTCAAGACCG CCGATGTTGC CGGACCGCTG ACCTCGGTGC AGTTCGACGT CGGCTGGTAT
TCGGACGGTT CGGCCGATAC GCCTGATCTG CTGGAGACCT CGATCGACAA GCCGGAATAC
GCCTCCGGCG ACACCATGAC GGTGACGGTC AACGCGCGCA CCGCGGGTCT TCTGACCGTC
AACGTGCTCG GTGACCGGTT GCTGACCACG CAGTCGCTGC AGGTCAAGCC GGGCAGCTCG
CAGGTCAAGC TCAGCGTCGG CAAGGATTGG GGCTCGGGCG CTTATGTCGT CACGACGCTG
CGGCGGCCGC TCGACACCTC CGCGCAGCGG ATGCCGGGCC GGGCGATCGG GCTGAAATGG
TTCGGCATCG ACAAGGCGGC GCGGACGCTG TCGGTCGAGC TGTCGCCGCC GGCCTTGGTG
CGGCCGTCGA CGACACTGAA GCTGCCGGTC AAGCTCGGCG GGCTGTCGCC CGGTGAAGAC
GCCAAGATCG TGGTTGCCGC GGTCGACGTC GGCATCCTCA ATCTCACCGG CTACAAGCCG
CCGGCGCCGG ACGTGTATTA TCTCGGCCAG CGCCGGCTGA GCGCGGAGAT CCGCGACCTC
TATGGCCAGT TGATCGACGG CATGCAGGGT GCGCGCGGCC AGATCCGCTC CGGCGGCGAC
TCCTCGGCCG CGGAGCTGCA GGGCAGCCCG CCGACGCAGA AGCCCTTGGC GCTGTATTCC
GGCATCGTCA CCGTGGCGGC CGACGGCACC GCGACGATCG ACCTCGAGAT CCCCGAATTC
GCCGGCACGG CGCGGGTGAT GGCGGTGGCG TGGACGGCCA CCAAGGTGGG CCGCGCCAAC
ACCGACGTCA CGGTGCGCGA TCCGGTGGTG CTGACCACGA CGCTGCCGCG CTTCCTGCGC
AACGGCGACC GCGGCACCAT GGCGTTCGAT CTCGACAACG TCGAAGGCGC CGCGGGCGAC
TACACCATCA AGGTCAGCGC CAGCGGTCCG GTGAAGCTGA GCGGCGAGGC GGCCACGACG
ATGAAGCTCG CCGCCAAGCA GCGCGGCTCG GCCAAGCTGA TGCTGGACGC CGGCGGCGCC
GGCACGGCTG CGCTCGACGT GGCGATCCAG GGGCCGAACG GCCTGTCGCT GGCGCGGCAC
TATGCGCTCG ACATCCGTCC CGCCAACCAG ACCCTGGCGC GGCGCTCGAT CCGGACGCTC
GCCAAGGGTG AAAGCCTGAC GCTGACCTCG GACATGTTTT CGGACCTGGT GCCGGGCACC
GGCGGGCTGT CGCTGTCTGT GAGCATGTCG ACCGCGCTCG ACGCCGCGAC CATCCTCAAG
GCGCTCGACC GTTATCCGTT CGGTTGCACC GAGCAGATCA CCAGCCGCGC GATGCCGCTG
CTCTACGTCA ACGATCTCGC CGCCGGCGCG CATCTGGCGA TGGACGGCAG CGCCGACGAG
CGGATCAAGG GCGCGATTGA CCGGCTGCTG TCGCGGCAGG GCTCGAACGG CTCGTTCGGG
CTGTGGTCGA CGGGGGGCGA CGATGCCTGG CTCGACGCCT ACGTGACCGA CTTCCTGACC
CGGGCGCGCG AGAAGCGTTT CGTGGTGCCG GACGTCGCCT TCCGCGCCGC GCTCGACCGG
ATCCGCAACT CGGTGGTCAA TGCCGACGAG CCGGAAAAGG ACGGCGGCCG CGATTTGGCC
TACGGGCTGT ACGTGCTCGC CCGCAACGGC GCCGCGCCGA TCGGCGACCT GCGCTATCTC
GCCGACACCA AGCTCGACAA GCTGGCGACC CCGATCGCCA AGTCGCAGCT CGCCGCGGCG
CTGGCGCTGG TCGGTGATCG CGCGCGGGCC GAGCGGGTCT ATGCGGCGGC GGCCGACAGT
CTCAATCCCA AGCCTTCGAT CGTGTTCGGC CGGGTCGACT ACGGCTCCGA GCTGCGCGAC
GCCGCCGCTT TGGTGTCGCT CGCCAGCGAA GGCAACGCGC CGCGACCGAC GCTGACGACG
GCGGTGCAGC GGGTCGAAGC CGCGCGCGGG TTGTCGCCTT ACACCTCGAC CCAGGAGAAC
GCCTGGCTGG TGCTGGCGGC GCGCGCGCTC GCCAAGGAGA CGATGGCGCT CGACCTCAAC
GGCGATGCGG TGAAGACGGC GCTGTATCGC AGCTACAAGG CCGACGAGGT GAAGGCCAAG
CCGCTCAAGA TCGCCAACAC CGGCGACTCC CCGGTGCAGG CGGTGGTGAC GGTGAGCGGT
TCGCCGATCA CGCCCGAGCC GGCCGCGAGC AACGGCTTCA AGATCGAGCG TCATTACTTC
ACGCTCGGCG GCGAGCCGGC CGACATCACC AAGGCGAAGC AGAACGAGCG CTTCGCGGTG
GTGCTGACGA TCACCGAACC GAAGCCGGAA TACGGCCACG TCATGATCGC CGACTACCTG
CCGGCGGGCA TCGAGATCGA CAACCCGCAT CTGGTGTCGT CGGGCGATTC CGGCACGCTG
AGCTGGATCG CCGACGGTGC CGAGCCGGTG AACACCGAGT TCCGCGATGA CCGCTTCACC
GCCGCGATCG ACCGCAAGGC CGACGACAAG TCGGTGTTCA CGGTCGCCTA CGTGGTGCGC
GCTGTGTCGC CCGGCAAATA CGTGCTGCCG CAGGCGGTGG TCGAGGACAT GTACAATCCC
TCGCGCTATG GCCGCACCGG CACCGGTACG ATCGAGGTGC GGTCGGCGAA ATGA
 
Protein sequence
MIGLVRALTL CAGLALGLAS AQAADKAFQR DELADAAIKL EAQIKSEAAA TNKPTAVLRS 
DADAAFKRGD YRGGLQILGQ IAALDPADGD NWLRLARTVL QIKAATSSEQ TFLRERATTA
AYIAYQRAKS PREEADALAL LGRAMADRSL WRPALDSLRL SLDLREVADI RGQYEKLRAE
HGFRLLDYTV DSDSASPRVC FQFSEELAKR TDFAPYVTLA GTDKPAISAE ERQLCVEGVK
HGERYNINLR AGLPSTVKEA LAKSAEFNVY VRDRKPLVRF TGRAYVLPRT GQRGIPLVSV
NTPTVAVQVF RIGDRNLINT VVDSDFQRTL SRYQLSDLGN ERGAKVWTGE LDTATAALNA
DVTTAFPVDQ VLGDLQPGVY VMTAAPKGPT ANSDDDGQLA TQWFIVSDLG LTAFSGNDGV
HVFVNSLAST DPLANTEVRL IARNNEVLAT RKTDASGHVL FEAGLARGEG GLSPALLTAS
SDKADYAFLS LKTNAFDLSD RGVSGRAVPA GADAFVYAER GVYRSGETVH LTALLRDGQG
VAMTASPMTL VVERPDGVEY RRAVLSDQGA GGRSLDVALN SAVPTGTWRV RAFTDPKGAS
VGETTFMVED YVPDRIEFDI STKDKAIKAD APVELKVDGR FLYGAPASAL QIEGDLLVAP
AEGRPGYAGY QFGVADEETT SNERTPLENL PETDADGAAT FELSLPKPPS STRPQEAQIF
VRMAEAGGRA VERKLVLPIA PAAAMIGVKP LFADRNVAEG DVAKFDVAFV APDGTSLPRS
GLRYELLKIE SRYQWYRQNS SWDYEPVKST KRVADGDLSI KAGEPARLQF NPEPGRYRLD
VKTADVAGPL TSVQFDVGWY SDGSADTPDL LETSIDKPEY ASGDTMTVTV NARTAGLLTV
NVLGDRLLTT QSLQVKPGSS QVKLSVGKDW GSGAYVVTTL RRPLDTSAQR MPGRAIGLKW
FGIDKAARTL SVELSPPALV RPSTTLKLPV KLGGLSPGED AKIVVAAVDV GILNLTGYKP
PAPDVYYLGQ RRLSAEIRDL YGQLIDGMQG ARGQIRSGGD SSAAELQGSP PTQKPLALYS
GIVTVAADGT ATIDLEIPEF AGTARVMAVA WTATKVGRAN TDVTVRDPVV LTTTLPRFLR
NGDRGTMAFD LDNVEGAAGD YTIKVSASGP VKLSGEAATT MKLAAKQRGS AKLMLDAGGA
GTAALDVAIQ GPNGLSLARH YALDIRPANQ TLARRSIRTL AKGESLTLTS DMFSDLVPGT
GGLSLSVSMS TALDAATILK ALDRYPFGCT EQITSRAMPL LYVNDLAAGA HLAMDGSADE
RIKGAIDRLL SRQGSNGSFG LWSTGGDDAW LDAYVTDFLT RAREKRFVVP DVAFRAALDR
IRNSVVNADE PEKDGGRDLA YGLYVLARNG AAPIGDLRYL ADTKLDKLAT PIAKSQLAAA
LALVGDRARA ERVYAAAADS LNPKPSIVFG RVDYGSELRD AAALVSLASE GNAPRPTLTT
AVQRVEAARG LSPYTSTQEN AWLVLAARAL AKETMALDLN GDAVKTALYR SYKADEVKAK
PLKIANTGDS PVQAVVTVSG SPITPEPAAS NGFKIERHYF TLGGEPADIT KAKQNERFAV
VLTITEPKPE YGHVMIADYL PAGIEIDNPH LVSSGDSGTL SWIADGAEPV NTEFRDDRFT
AAIDRKADDK SVFTVAYVVR AVSPGKYVLP QAVVEDMYNP SRYGRTGTGT IEVRSAK