| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2756 |
|---|
| Symbol | |
|---|
| ID | 6410420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 2998176 |
|---|
| End bp | 2999198 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642712632 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_001991740 |
|---|
| Protein GI | 192291135 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0730533 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCGG AAGACATCGT TTCAGATTTG GATCGGGAGT TACTGCAGGA TTTTCCGCTG
GTGCGGAGCC AAGATCCGAT CGAAGCGAGA GACATCCTGC GGCGCTATGG CGTCGACATG
ATCGTCTCGA ATCCCAGCGA CTTCTTCATG CGGACCAACC TCGCCGAGCT GCCGCATATC
GGCTTGTATT TCGTCCATAG CTCCGGTGCG ACCCGGCTGG TGATCCCCGA GCGCGAGACC
GCCCTGGTGC ATCTTTCCCT CCAGGGTGAC GCGTTACTCT CCAGCGGCAC GCGCCGCGTC
GAACTGTCGC AAGGTTCAGC TTGTATTTGT TCGCCAGGGG TGAGTGCCCA GCTCGAATTC
GGACAGAACT CGCGGCAATT GCTGCTGCGG ATGCCGCAGC GGGTGCTGGA GCGCGCGATC
GCTGCGCTGG TCGGCTTCAA GCCGCGGCAG CCGATCCTGT TCGAGCCCGC GATCTGCAAC
GACGAGCCGC GCTATCTCGG TTTCAGAGAG CTGACGACGC TGCTCGCCTC GCGGCTGGAC
TCCAGCTACT CGGTCTGGCC GAAGAACGTG CTGCTCCATC TGGAGCAATC CTGCATTACC
GCGCTGCTAT ATTGCAGCCG GCACAATCTC GGCCACCTGC TGGAGAACGC CAACGCGGTG
AACGACGACG TGCCGCGCTA CGTGCGGACG GCGGAGCACT ACGTCGAGAG CCACCGCGAC
GAAGACATCA GCATCGAGGA CGTCGCACGG ATTGCCGGCG TCAGCATCTC GACCCTCACC
CGCGCCTTCC TCAAGCATCG CGGCTGCTCG CCATCGGCTT ACGTCAAGCG CGTCAAGCTC
AACCACGCCA AGCGGCTGCT GGAGACTGGC GCCGCCACCA CGCTGATCGG TGTCGCGCTC
CGTTGCGGGT TCGCCAACCC GAGCCGCTTC TCCCAGGATT ATCGAGAGGC TTTCGGCGAA
TCTCCGACCG AAACGCTGCG CCGCTGCCGC CCCAATCGAG GCCCCGAGAC GCAAAAACAT
TAA
|
|---|
| Protein sequence | MNSEDIVSDL DRELLQDFPL VRSQDPIEAR DILRRYGVDM IVSNPSDFFM RTNLAELPHI
GLYFVHSSGA TRLVIPERET ALVHLSLQGD ALLSSGTRRV ELSQGSACIC SPGVSAQLEF
GQNSRQLLLR MPQRVLERAI AALVGFKPRQ PILFEPAICN DEPRYLGFRE LTTLLASRLD
SSYSVWPKNV LLHLEQSCIT ALLYCSRHNL GHLLENANAV NDDVPRYVRT AEHYVESHRD
EDISIEDVAR IAGVSISTLT RAFLKHRGCS PSAYVKRVKL NHAKRLLETG AATTLIGVAL
RCGFANPSRF SQDYREAFGE SPTETLRRCR PNRGPETQKH
|
|---|
| |