Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_2648 |
Symbol | |
ID | 6410310 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 2872340 |
End bp | 2873257 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642712524 |
Product | methylisocitrate lyase |
Protein accession | YP_001991634 |
Protein GI | 192291029 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2513] PEP phosphonomutase and related enzymes |
TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.843725 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCGTATC TCGTTGCTGC TGATCTCTTC TCCGACCCCG CAGGCGTGCG GTTCCGCTCG CTGATCGAGC GCGGAGGCAT CGTCCGGATG CCGGGCGCGC ACAATGGCAT GGCCGCGCTG CAGGCGCGCG CCGCCGGCTT CGAGGCGTTG TATCTGTCGG GCGCCGCGAT GACCGCGTCG ATGGGGATTC CCGACCTCGG GATGATCACG GTCGACGAGG TGGCGTTCTT CATCCGGCAG ATCGCGCGGG CAGGCGGCCT TCCCACCCTG GTCGATGGCG ACACCGGGTA CGGCGAGGCC CTCAACGTCA TGCACATGGT CCGCACCTTC GAGGATGCAG GCGCGGGCGC GGTTCATATC GAGGATCAGC TCCTGCCGAA GAAGTGCGGC CATCTCAACG ACAAGAAGCT CGCCGACGCG AACGACATGG CCGCCAAGGT CGCCGCCGCG GCGAAAGCGC GCCGACATCT CTATCTGATC GCACGAACCG ATGCGGCGGC GAGCGAAGGC ATCGACGGCG CTGTGGCGCG CGCCAGGCTG TACATCGAGG CCGGAGCCGA CGCGATCTTT CCCGAGGCGC TGACCACGGC CGAGATGTTC CGCGAATTCG CTGCTCGGAT GCCGGGCGTG CCGCTGCTCG CCAACATGAC CGAGTTCGGC CGGACACCGT TCTTCACCGC CGATGAGTTT CAGCAGATGG GCTACCGGAT GGTGATCTGG CCGGTGTCGT CGCTGCGCGT CGCCAACAAG GCGCAGCAGA AACTCTATGC CACGTTGCAT CGCGACGGTT CGACACAGGC AATGCTCGGC GACATGCAGA CCCGCGCCGA ACTGTACGAA ACCCTTGGTC TTGATCGCTT CGAGGCGCTC GATGCCTCGA TCGTCCGATC GATCGCGCCG GACTCGGTGG GATCATAA
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Protein sequence | MPYLVAADLF SDPAGVRFRS LIERGGIVRM PGAHNGMAAL QARAAGFEAL YLSGAAMTAS MGIPDLGMIT VDEVAFFIRQ IARAGGLPTL VDGDTGYGEA LNVMHMVRTF EDAGAGAVHI EDQLLPKKCG HLNDKKLADA NDMAAKVAAA AKARRHLYLI ARTDAAASEG IDGAVARARL YIEAGADAIF PEALTTAEMF REFAARMPGV PLLANMTEFG RTPFFTADEF QQMGYRMVIW PVSSLRVANK AQQKLYATLH RDGSTQAMLG DMQTRAELYE TLGLDRFEAL DASIVRSIAP DSVGS
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