| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2622 |
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| Symbol | |
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| ID | 6410284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 2838170 |
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| End bp | 2840401 |
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| Gene Length | 2232 bp |
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| Protein Length | 743 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642712498 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_001991608 |
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| Protein GI | 192291003 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00560047 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAAGAT TTGCCAGTGT CGCCGGATCG AGGTGCGGGG CCTCCCTCTG TGCGTTGGCA
CTTCTTGTGA CCGCGTCAGA AGCCCAGCCG CAAGCGGACG CGACGTTCGA CTTCAGGATC
GAGCCCAAGC CTCGACTGTC GGCGCTGGCC GACTTCACGA CGACAACGGG GATTCAGGTC
GTCAGGCTCG GCGGAGGTGC AATCAGTGGC GCCTCACCCG CTGTTAGCGG CCAACTCGCG
GCCGAGGCCG CGTTACGCGA GATCCTCGCC GGATCGAACC TCACCTATCG CTTCACCGGC
CCCCGCACCG TCGCCATCGA GTCATCGCCC GACGCCGCCA TCGCGCTCGA ACCGATCAGC
GTGACTGAGA TCAGCATCGG GCGCGGCGGC GTCAGCGAGA TCGATATCAC CAGCGCCGAT
ATCGAACGCC GGAATGCGAC CGACCTGAGA GGTGTGTTCC GCGGCGAACC GAGCGTTGTC
GTCGGCTCGT CATTGCCGAT GTCCCAGAAG CTCTATGTCC AAGGCATCGA GGAAACCAAT
CTGGCGATCT CGATCGACGG CTCACGCCAA AACAACAAGG TATTCCACCA CAACGCCACC
ACGATGATCG ACCCCAGCCT GCTCAGAGCA GTCCGCGTCG ATGCTGGTGT GGCACCCGCC
GATGCCGGCC CCGGAGCGCT CGGAGGCGCG ATCGCCTACT TCACCAAGGA TGCGCGAGAC
TTCCTCTCCG CGGACGGTTT CGGCGGCTCG ATCAAGTCGA CCTTCAACTT CAACGGCAAT
GTCTCGACCA CCAATCTCAC CAGCTACAGC CGCCAAGGTG GATTCGAAGC GCTCGGCTCG
TTCACCTATG GAAAAGGCAG CGAGTTTCGA GCCGGTAACG GCGAACAGGT GCTCGGCAGC
GCGACCGATG TCTTGAGCGG CCTCGGCAAG CTCGCCTATC AGAGCGCCGA CGGGCATCGC
TTGTCCATCA GTCACGAGCA GATCCGTGAC GACGCCATCC GGCCGTTCCG CGCCAACGCT
GTGCAGATCT ACGGCCCGCA GACGACGCCG CTCGTCCGCC CCTACAAGCT CGACCGGCAA
AACACGGTCG TCAGCTACTC CAATGTCTCT CCGGAGGGGT GGTGGAATCC AAACGTCGTG
CTTGGCTACA ACCGCACCCA GGTTGCGGTC GACCAATACG CCGGTGCCAC GCCCGACACC
TACAGCTACA CCAGCGAGGG CCTGACCGAC AGCCTCAACG GTAAGGTGGA GAACAAGTTC
GAACTGTCGA TCGCTGACAT CGTCGCCGGC ATCGATTTCT ATCGTGACCG CGCCAGATCG
ATCGAACGGA CCTATCGAAC TGCCGAGACC GCCGACAATG TCGGCGCCTA CGCTCAGGCC
CGCCTTAAAT TCGCGGACAG CGCCAAGCTG TCGTTCGGGC TGCGCGGCGA CCATCAGCAG
TTCGGCGGCA TCAGTGGCTT TCGCTCCAGC GACCAGGGCT TGAGCAGCAA CGTATCGGGC
GAATACGCCC TGACCAGTCA CCTGACCGCA AAGGCCGGTT ATTCCAACGT CTGGGCCGGC
GTTCCGCTTG CAGAAAACTA CGTGCAGAAT CCGGCCTGGA GCTACGGCAC CGGACCGCGT
TCAGTCACCT CGGACAACGC AACCGCTGCA CTGGTCGCGC TCTTTACGAG CTTCCGGATT
GAGGGCGGCG TATTCCGCAC CCGGATCTGG GATGCACGAG TCCCGTTGTG GGCCGCCGAC
ATGGCGCTAC GTGCCTTCGA CGTGCAGAGC CAAGGCTTTC ACGTCGGCGG CACCTATTAT
TGGGATGATG GATTCGCTCG CCTGCAGTTC GTTCGGACCG ACACGTCGAT CAATGGCAGG
CCGGCCGACA GCTATCTCGG CAAGTACCTG ACCGCTCCGA TCGGCGACAT CCTGACGGTT
CAGGTCGCGC ACAGTTTCGC GTCATTGAGT CTGACAATCG GCGGTGATGT CGAGATCGCA
TTCGAGGACG ACAGCCTGCT GAACCCCGTC ACGGGGATCG GTCGTCTCGA CGGTTACGAA
GTCGTCAACA TCTTTGCCGA ACACCGTCCG TTCGCCCTGC CCTCGCTCAC GCTTCGCGGC
GAGGTTCGCA ATCTGTTGAA TCAGACCTAT GCGGCGCGCG GCACTTACGG CCTCGAATAC
GGCAGCGGCG TGGTGCGGCC ACTCTATGAC CCAGGCCGCT CTTACCTCGT CAGCGCCAAG
CTGACCTTCT AG
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| Protein sequence | MRRFASVAGS RCGASLCALA LLVTASEAQP QADATFDFRI EPKPRLSALA DFTTTTGIQV
VRLGGGAISG ASPAVSGQLA AEAALREILA GSNLTYRFTG PRTVAIESSP DAAIALEPIS
VTEISIGRGG VSEIDITSAD IERRNATDLR GVFRGEPSVV VGSSLPMSQK LYVQGIEETN
LAISIDGSRQ NNKVFHHNAT TMIDPSLLRA VRVDAGVAPA DAGPGALGGA IAYFTKDARD
FLSADGFGGS IKSTFNFNGN VSTTNLTSYS RQGGFEALGS FTYGKGSEFR AGNGEQVLGS
ATDVLSGLGK LAYQSADGHR LSISHEQIRD DAIRPFRANA VQIYGPQTTP LVRPYKLDRQ
NTVVSYSNVS PEGWWNPNVV LGYNRTQVAV DQYAGATPDT YSYTSEGLTD SLNGKVENKF
ELSIADIVAG IDFYRDRARS IERTYRTAET ADNVGAYAQA RLKFADSAKL SFGLRGDHQQ
FGGISGFRSS DQGLSSNVSG EYALTSHLTA KAGYSNVWAG VPLAENYVQN PAWSYGTGPR
SVTSDNATAA LVALFTSFRI EGGVFRTRIW DARVPLWAAD MALRAFDVQS QGFHVGGTYY
WDDGFARLQF VRTDTSINGR PADSYLGKYL TAPIGDILTV QVAHSFASLS LTIGGDVEIA
FEDDSLLNPV TGIGRLDGYE VVNIFAEHRP FALPSLTLRG EVRNLLNQTY AARGTYGLEY
GSGVVRPLYD PGRSYLVSAK LTF
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