| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2620 |
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| Symbol | |
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| ID | 6410282 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 2835196 |
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| End bp | 2837508 |
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| Gene Length | 2313 bp |
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| Protein Length | 770 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642712496 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_001991606 |
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| Protein GI | 192291001 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor
[TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.526793 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAAAGA AAGCTGGTCA GGTCGCTCTA TTCGTTTCAG GCTTAGGCGT GATGCCGCTC
GCCGACGGAG CCTTGGCGGA AACTTCGTCC CGATCGACGA ACCTTCCGCC GATCGAGATC
CTCGAACCGC AAGCGCGTCA GCGCGCAGCG AGCCGGCCTA CGAGCACCGC AGCCAATCCG
CGCCGCGTGG CGTCCCGTCC CCGCGCGCGG CAGGCCGAGG CGGCCCCGGC GGTATTCCCC
ACGCCCGGCG TGCCTCAGAC CGGAACGGTC GGACAACCAC CAGTCCCCTA TGCCGGTGGT
CAGGTCGGCA GCGGTGCACG GCTTGGGCTA CTCGGCAACA CCTCGATCTT CTCGGCACCT
TTCAACATCA CCAGTTTCAC CTCCAAGCTG ATGGAGGATC AGCAGGCGCG GAGTATCGCG
GACGTGGTGC TGAACGATCC GTCGGTGCGC AACGACGCTC CTCCGTTCAG CGAGCGCGAC
TCGTTCTTCA TCCGCGGCTT CTCAGTGACC AACCTCGACA CTGCCTATGA CGGGTTGTTC
TATCTCGCCA ACCCGCGGCG CAGCTTCCTC GAGGGCATCG AGCGGGTCGA GATCCTGAAA
GGCCCGAGCG CGCTGCTCAG CGGCGGCACC GCCCGGGTCG GCGGCACGAT CAATCTGATC
CCGAAGCGGG CCGGCGACGA ACCACTCACG CGCCTGACCA CTGGCTGGAT GAGCGACTCC
CAGATCTGGA ATCACATCGA TGTCGGTCGC CGCTTCGGCG ACTTCAAGGA ATGGGGCGTG
CGCTTCAACG GCTCCTACCG CAATGGCGAT ACGCCGCTGG ACCTCAACTC GGTTGAGGTA
GGCGTCGCCT CGCTCGGCCT CGATTATCGC AGCGAGGACT TCCGCGCCTC GCTGGACCTC
AACAGCTCGG TCCAGCACAT CAATGCGCCG ACGTCGCTGT TCAACTCGGC TGCGCCGAAC
ATCGTCATTC CGCCCGCGCC CAACGGCCGC ATCAACACCG CAAGCCGGGA CGAGTACATC
GACAGCCGCT ATAAGATGAT CGCCGGCCGC GCCGAATACG ACATCCTGCC GGATACCACG
CTGTATCTCG CCGGTGGCGG CAGCATCTAC AACGAAGACT TCCTCACCTC GTCCTACCGG
ATCACCAATT TCAATGGGAC GGCGACCAAC ACGCTGGCAA TCCAGCCGCA AGAGCTGCAG
GGCTATACCG GCGAGATCGG GCTGCGGTCG AAATTCAGGA CCGGCGTGAT CGGCCACCAG
CTCAACATCT CGGCGGTCGA AGCCAACAAC GAGCTGTATC GCGGCGGAAC GCTCGGCTTC
ACGCCGTACA GCTACGTGAC CAACATCTAC AATCCCGTGC GGCCACGACC AGGGGCGTTC
CAAACCAGCG GCTTCGCGCA GTCCGACGAC CGGCCCCTGC TGTCGCGGCT GACCGCTCGT
AGCGTCGCGG TCTCCGACAC GCTTTCGTTG TTCAACGATC GGCTGCTTCT GACCCTCGGC
GGCCGCTGGC AGGACATCGC GCTCAGCGGC TTCGTCACCG CAGCCGGGCC AACGCAGGGA
ACCCGCTCAT CCTACTATAA CGAAGCCCGC TTCAGCCCCG CCGTCGGCGC CGTGATCCGC
GCAACGGACG AGCTTTCGAT CTACGGAAAC TATATCGAAT CGCTCGACTC GGGACCGACG
GCGCCGGCGA CGGCGCGAAA CCCCAACACG GTGTTTCCGC CAATGGTCAG CAAGCAACAA
GAAGTCGGCG CCAAGTACGA TTTCGGTTTC GTGGCGCTGA CGGCCTCACT GTTCCAGATC
GAGCAGCCCA GTGCCTACAC CGACCCCACC ACCCGCATCT TCTCGGTCGA CGGGCTGCAG
CGCAACCGCG GCGCCGAATT CAACATCTTC GGCGAGCCCT TTAAGGGCGT CCGACTGCTC
GGCGGCATCG CACTGATCGA TGCCAAGCAG GTATCGACCA TCGGCGGCCG CTACAACGGC
AACGACGTGC CCGGCGTGCC GACCACCTCG CTGACCCTTT ACGGCGAATA CGATCTGCCG
GCCTGGATGG CTTCGGGCGT CACCCTCACC GGCCGCGTCA TCCACACGGC CGATGTGTTC
TACGATCAGG CCAACACGCA GACCGTGTCC GAATGGACGA GGGTCGACCT CGGCGCCCGC
TACACGTTCG TGGGCCCGAC CGGCAAGCCG GCCGTGCTGC GCGCGACCGT CGAGAACGTC
GCGGATACGG CCTACTACCT GTCGGCCGCC CGCGGCTATC TGGCCGTCGG CGCACCTCGC
ACCTACATGG TGTCGGCGAC CTTCAATTTC TGA
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| Protein sequence | MRKKAGQVAL FVSGLGVMPL ADGALAETSS RSTNLPPIEI LEPQARQRAA SRPTSTAANP
RRVASRPRAR QAEAAPAVFP TPGVPQTGTV GQPPVPYAGG QVGSGARLGL LGNTSIFSAP
FNITSFTSKL MEDQQARSIA DVVLNDPSVR NDAPPFSERD SFFIRGFSVT NLDTAYDGLF
YLANPRRSFL EGIERVEILK GPSALLSGGT ARVGGTINLI PKRAGDEPLT RLTTGWMSDS
QIWNHIDVGR RFGDFKEWGV RFNGSYRNGD TPLDLNSVEV GVASLGLDYR SEDFRASLDL
NSSVQHINAP TSLFNSAAPN IVIPPAPNGR INTASRDEYI DSRYKMIAGR AEYDILPDTT
LYLAGGGSIY NEDFLTSSYR ITNFNGTATN TLAIQPQELQ GYTGEIGLRS KFRTGVIGHQ
LNISAVEANN ELYRGGTLGF TPYSYVTNIY NPVRPRPGAF QTSGFAQSDD RPLLSRLTAR
SVAVSDTLSL FNDRLLLTLG GRWQDIALSG FVTAAGPTQG TRSSYYNEAR FSPAVGAVIR
ATDELSIYGN YIESLDSGPT APATARNPNT VFPPMVSKQQ EVGAKYDFGF VALTASLFQI
EQPSAYTDPT TRIFSVDGLQ RNRGAEFNIF GEPFKGVRLL GGIALIDAKQ VSTIGGRYNG
NDVPGVPTTS LTLYGEYDLP AWMASGVTLT GRVIHTADVF YDQANTQTVS EWTRVDLGAR
YTFVGPTGKP AVLRATVENV ADTAYYLSAA RGYLAVGAPR TYMVSATFNF
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