| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2616 |
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| Symbol | |
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| ID | 6410278 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2830651 |
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| End bp | 2832156 |
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| Gene Length | 1506 bp |
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| Protein Length | 501 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642712493 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_001991603 |
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| Protein GI | 192290998 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGATGA TCCTTGTCGC CGTGATGCTG GGCGGATGCG CGGTCGGTCC CGACTATCGG
ACGCCACTTC TCGCGACGCC CGCGCAGTGG AGCGGGGCCG GCGTCGCGAC CCCTGCGGCG
CCCGTGTTGC CACGGTGGTG GGCCCGGTTA CGCGATCCGA CCCTGGATCG GCTGGTGGTC
GAGGCGGTGG ACGGCAATCT CGACGTCGCG ACGGCGAGCG CGCGGGTGCG CGAGGCGCGT
GCGAGCTATC GGCAGGCCGT AGGCGCGCTG CTTCCGACGA TCGCCAACAC CGAGTCGGCA
AGGCTGGCAA AGGGGACGGG TGTTGCGTCG GCGGCACCCG GCCGCCCCAA CCTCGGCGGT
CCGTCATCGG TGGTGGGATC GGACGGCACC TCCGGTCTGT ATCAGGCGGG GTTCGACGCG
AGCTGGGAGC TCGATCTGTT CGGCGCCAAC CGTAGGGCCG TCGAGGCCGC GGCATACGGC
ATCGATGCCT CGGACGAGAA TCTGCGCGCC GTGCTGCTGA CGCTGGTCGG CGACGTCGCA
TCGAGTTACG TCGAGGCGCG CGGCTATCAG GCGCGCATCG CGCTCGCCCG TCGCACGGCG
ACGTCGCAGG ACGAAACCAC CAAGATCACC CGCAACCGCC TGGCCGCGGG CACCGGGTCG
GCCGTGGACC TTGCCACCGC AACCGGACAG GCGGCGGCGA CCCGCGCCGC CATTCCCACG
CTCGAGACGG CCTACGCCCA AACCGTGCAT CGGCTGTCGG TGCTGACCGG GCGGCCGCCT
TCCGCACTGT CGGCTCTGCT GGCGCGGCCG AAGCCGATCC CGGCGCCGAA GCTGCCGGTG
CCGGCCGGGA TTCCGGCCGA TGTTCTGCTG ACGCGGCCCG ATGTGCGGCT GGCGGAGCGC
CGCTACGCGC AATCCACGGC CCGGATCGGG CAGGCCGAAG CCGCGCTGTA TCCCAGCGTC
AGCTTGGCGG GGAACATTGC AACCTCAGGC ACCAAGCTCG GCGATCTCGG CAGGAATTCG
TCGATCAGCT GGTCGCTCGG CCCGACCCTG ACGGTGCCGA TCTTCAACGG CGGAAAATTG
CGAGCGGCGG TGGAGATCGC GGAGGCACAG CGTGACCAGC AGTTTCTGGC CTACCAGGCC
TCCGTGCTCA CCGCGTTGAA GGACGTGGAA GACGCTCTGG TGTCGCTGAG TAACGAGCAT
TCGCGAAGCC GGATACTCGC GACCTCGACC ACGGCCTATC GGCAGGCGGC GAGCCTGTCC
CAGTCGCTGT ATCGATCCGG ATCGTCGAGC TTTCTCGACG TGCTGACCGC CGAGCGATCG
CTCTACAGCG CCGAAGACGC GTTGCTGCAG AGCCGGGTCA AGATCGTCTC GGACTACATC
GCACTGAACA AGGCACTCGG AGGTGGGTGG GACGGCGAGG TCGATGCGCT GACGCCGGAG
GTGATCGACG TCGACACCGG ACCGCATCCA GCCGGTCCGA TCACGCATCG GCGTGCGGCT
TTATGA
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| Protein sequence | MLMILVAVML GGCAVGPDYR TPLLATPAQW SGAGVATPAA PVLPRWWARL RDPTLDRLVV
EAVDGNLDVA TASARVREAR ASYRQAVGAL LPTIANTESA RLAKGTGVAS AAPGRPNLGG
PSSVVGSDGT SGLYQAGFDA SWELDLFGAN RRAVEAAAYG IDASDENLRA VLLTLVGDVA
SSYVEARGYQ ARIALARRTA TSQDETTKIT RNRLAAGTGS AVDLATATGQ AAATRAAIPT
LETAYAQTVH RLSVLTGRPP SALSALLARP KPIPAPKLPV PAGIPADVLL TRPDVRLAER
RYAQSTARIG QAEAALYPSV SLAGNIATSG TKLGDLGRNS SISWSLGPTL TVPIFNGGKL
RAAVEIAEAQ RDQQFLAYQA SVLTALKDVE DALVSLSNEH SRSRILATST TAYRQAASLS
QSLYRSGSSS FLDVLTAERS LYSAEDALLQ SRVKIVSDYI ALNKALGGGW DGEVDALTPE
VIDVDTGPHP AGPITHRRAA L
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