Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_2614 |
Symbol | |
ID | 6410276 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 2826038 |
End bp | 2827255 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642712492 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_001991602 |
Protein GI | 192290997 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.34834 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGTCGTCCC ATTCAACGGT TGCCGCGATC GCGGCCCTGG CGTTCGCCGT GGCGCTTGCC GGTTGCAAGC CTCACCCGGA CGATCACGGC GCCGATTCCG CCGGCGTCGA CCGTCCCGAG GTCGGCATCG TGACGCTGCG CCCGCAGGCG GTGGCGATAA CCGCGGAGCT TCCCGGTCGG GTCGTCGCGC CGCAGACGGC CGAGGTGCGT CCCCAGGTGT CCGGCATCGT TCAGCAGCGC CTGTTCACCG AGGGGAGCGA AGTCGCCGAA GGTGCGTCGC TCTACCAGAT CGATCCTGCG CCCTACAAGG CGGCCTATGA CAGCGCCGTC GCGGCTTTGC GGAAGGCGGA AGCTGCGGTG CCCAGCGCGC AGGCCAAGTC TGAACGCTAT CAGGGCCTCG TCAAACAGAA CGCCGTCAGC AAACAGGATT TCGACGATGC CGTTGCCGCG CTTGCCCAGG CGAAAGCGGA GGTGGCCACC GCGAAAGCCG CCGTCGAGAC CGCCGGGATC AATCTCGACT ACACGACGAT CAAGGCGCCG ATCGGCGGCC GGACCGACCG CTCGTCGCTG ACGCCCGGTG CGCTGGTCAC GGCCGGCCAG ACCGGCTTGC TGACCACGAT CCGCACGCTC GACCCGATTT TCGTCGACGT CATTCAGTCG AGCACCAACC TGCTGAACCT GCGGCAAGCG ATCGACTCCG GACGCCTGAA AGTGAGCGGT CCGCATGTCG CGGTGAAACT GAAGCTGGAA AACGGCGCGA TCTATCCGCT GGCCGGCAAG ATGGAATTTT CCGAGGCCAA TGTCAGCACC TCGACCGGCA CGGTGACGTT ACGCGCGGTG TTTCCGAATC CGCGGCGACT GCTGCTGCCC GGGATGTATG CCCGCGCCGT GGTCGAAGAG GGCGTCGCGC CCGACAGCTT CCTGGTGCCG CAGCGCGCCG TCACCCGAAA CACCAAGGGT GAGGCGGTCG CGATGTTCCT CGACAAGGAC GGCAAGGCCG AGGAACGCGT CCTGTCCGTG ATCCGCAGCG TCGGCAACAA CTGGCTGATC GGCGCCGGCG TTCACGACGG CGACCGGGTG ATCGTCGAAG GCACGCAGTA TGTGCGTCCC GGGCAGATAG CCGCCGGCAC CGAAGTCGTG GTCGACGACA CGACCGGCAA AGTGCGCGAA CGGCTGCCGC GGCAACGACG CGCCGCGCGT CCGGGGGCGG AGCCATGA
|
Protein sequence | MSSHSTVAAI AALAFAVALA GCKPHPDDHG ADSAGVDRPE VGIVTLRPQA VAITAELPGR VVAPQTAEVR PQVSGIVQQR LFTEGSEVAE GASLYQIDPA PYKAAYDSAV AALRKAEAAV PSAQAKSERY QGLVKQNAVS KQDFDDAVAA LAQAKAEVAT AKAAVETAGI NLDYTTIKAP IGGRTDRSSL TPGALVTAGQ TGLLTTIRTL DPIFVDVIQS STNLLNLRQA IDSGRLKVSG PHVAVKLKLE NGAIYPLAGK MEFSEANVST STGTVTLRAV FPNPRRLLLP GMYARAVVEE GVAPDSFLVP QRAVTRNTKG EAVAMFLDKD GKAEERVLSV IRSVGNNWLI GAGVHDGDRV IVEGTQYVRP GQIAAGTEVV VDDTTGKVRE RLPRQRRAAR PGAEP
|
| |