Gene Rpal_2530 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_2530 
Symbol 
ID6410192 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp2730460 
End bp2732286 
Gene Length1827 bp 
Protein Length608 aa 
Translation table11 
GC content69% 
IMG OID642712408 
ProductTPR repeat-containing protein 
Protein accessionYP_001991518 
Protein GI192290913 
COG category[R] General function prediction only 
COG ID[COG0457] FOG: TPR repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.187337 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGGGGA TGAATCGTAA CGAGCGGAGG AAGCAGGCGA AGCTGGTCCC CAAGGGCAGC 
GGCCCGCCCC CGCAACCCAA TGCCGGACAG CAATGGTTTG CGGCCGCGGT TCAGCACCAT
CAGCAGGGCC GGCTGGCGGA GGCCGAGGCG CTGTACCGGC AGGTGCTGAA TGTGGATGCG
CGCCATGCCG ACGCCTGGCA TCTGCTCGGC GTGCTCGCGC TGCAGGTCGG GCGCAACGAT
ATCGCGCTGG AGATGATCGG CAAGGCGATC TCGCTCAACC GGATGGTCGC CGCCTATCAC
GGCAATCGCG GGCTGGCGCT GGACGGCCTC GGGCGCCCCG CGGAGGCGCT GGCGTCTTAC
GACGCGGCGC TGGCGATCGA GCCGCGCGTT GCCGAGGCGC ACTGCAATCG CGCCGCCGCG
CTGATCACGC TCGGCCGGCC CGAGGACGCC CTGCGCGCGG CCGAGGCGGC GCTGCGGCTG
CAGCCGGATG ACGTCAACGC GAAGATCAAT CGCGGCAACG CGCTCCGCGA TCTCGGCCGG
CTGGACGAGG CGCTATCCGC CTATGAGACC GTGTTACGAA CGGCCCCCGG CAATGCGCTG
GCGCAGACCA ACCGCGGCAT CGTCCTCAAG ACGCTGGGGC GGCTCGACGA GGCCCTCGCC
TGCTACGACG CCGCGCTGCA AGCCGATCCC AACCTCGCCG AAGCGCACAC CAATCGCGGC
GTCACGCTGA AGAACCTGTT GCGGCTCGAC GAAGCCCTGA CCGCCTGCCA GAAGGCGATT
CAGCTGCAGC CGCGCAGCGC CGATGCCCAT TACAATCTGG CCACCGTATT GCACGATCAG
TGCCGGCTCG ACGACGCACT CGCCAGCTAC GATCAGGCGC TGGCGCTGCG GCCCGACTTC
GCCATGGCGC GCTGGAATCG CGCCTGTATC CTGCTGTCGA CGGGCCGTTT CCAGGAAGGC
TGGCGCGAAC ACGAATGGCG GTCGCACAGG GAAAGCGCGC CGCGGCAATT TCCGCAGCCG
CAGTGGAGTG GCGAAGCGCT CGCCGGCCGA ACCCTGCTGC TGCATGCCGA GCAGGGTCTC
GGCGACACGC TGCAATTCCT GCGCTACGTA CCCAAGGTTG CGGCGACGGG CGCGCGGATC
ATCCTGGCGG TGCCGGGACC GCTGCACCGC CTCGTCGCGC AGTCATTCCC CGACGTTGTC
GTCGTCGACG ATGCCGGCGC CCTGCCCGCG TTCGACTTGC ACTGCCCGCT GCTGTCGCTG
CCGCTGTGCT TCGGCACCAC GCTCGAGACC ATTCCGGCGG ACGTCCCGTA TCTGTCCGCC
GATCCCGCCG CGGTGGCGCG CTGGCGCGAG CGCCTCAGCG CAGGATCGCG TCCCAAGGTC
GGTCTGGTCT GGGCCGGCAA TCCGCGACAC GCCAACGACC GCAACCGCTC GCTCCCGTTC
GCGCAATTGG CGCCCCTGTT CAACCTTGCT GGCATCGAGT GGATTTCATT GCAGGTCGGC
GACCGCCGCA CCGATCTGGC TCAGGCGCCA GCGGGCCTCC TTCGCGATGT CGCGGATGAT
CTGACCGACT TCGCCGAGAC CGCCGCCGCG GTGAGTGCGC TCGACCTCAT CGTCTCCGTC
GACACCGCAG TGGCCCACCT CGCCGCCGCG CTGGCGCGAC CGGTGATCAT GGCGATCCCG
TTCGTGCCCG ATTGGCGATG GCTGCTGGCC CGCGAGGACA GCCCCTGGTA TCCGACCGTC
CGCCTGGTGC GCCAAACCCG GCCGCAGGAC TGGGACGGCG TCGTGACCAA ACTCGCCGCA
ACGCTGACGC GCTTCATCGA GACATGA
 
Protein sequence
MTGMNRNERR KQAKLVPKGS GPPPQPNAGQ QWFAAAVQHH QQGRLAEAEA LYRQVLNVDA 
RHADAWHLLG VLALQVGRND IALEMIGKAI SLNRMVAAYH GNRGLALDGL GRPAEALASY
DAALAIEPRV AEAHCNRAAA LITLGRPEDA LRAAEAALRL QPDDVNAKIN RGNALRDLGR
LDEALSAYET VLRTAPGNAL AQTNRGIVLK TLGRLDEALA CYDAALQADP NLAEAHTNRG
VTLKNLLRLD EALTACQKAI QLQPRSADAH YNLATVLHDQ CRLDDALASY DQALALRPDF
AMARWNRACI LLSTGRFQEG WREHEWRSHR ESAPRQFPQP QWSGEALAGR TLLLHAEQGL
GDTLQFLRYV PKVAATGARI ILAVPGPLHR LVAQSFPDVV VVDDAGALPA FDLHCPLLSL
PLCFGTTLET IPADVPYLSA DPAAVARWRE RLSAGSRPKV GLVWAGNPRH ANDRNRSLPF
AQLAPLFNLA GIEWISLQVG DRRTDLAQAP AGLLRDVADD LTDFAETAAA VSALDLIVSV
DTAVAHLAAA LARPVIMAIP FVPDWRWLLA REDSPWYPTV RLVRQTRPQD WDGVVTKLAA
TLTRFIET