Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_2444 |
Symbol | |
ID | 6410106 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 2637435 |
End bp | 2639456 |
Gene Length | 2022 bp |
Protein Length | 673 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642712323 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001991433 |
Protein GI | 192290828 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCGAAC TTCCTTCCGC ACCGGATGCC CACACGTGGG GAATGATCAC CCTTGCCGCC GTGCTGTGTG CGCTGGGCGT GGTCGCAGCC TATGGCGGGC TGCGCAGCAT CCGGGTCAGC GAGGGCAAGG GTCGCCGGCA CTGGATCATC GCGACCTGCT TTGCATCGCT CAGCGCAGTT GCGGCCGTTG TGGCGTTGGC GCTGCTGGCA GCCTCGGATG CGCCGCTCGC GCCGACCATC GCACTGGTGC TGATGATCGG GTCGGTGATC GCCACCACCG GCTTTGCCAG CTTGGCGGTG TGGCTGAGTT CGATCGCAGG CCGCCGCACC CAACTCACCT TGGCCGAACG CGACATGGTG CTGGACGCGA TCCTCAACGA CGCGGCGCGC GGCTTCTGCC TGTTTGACGC CGTGGGGCGG CTGCAGCTCT GGAACGAAGC CTTTCTCGAT ATCTATGGAA TCCCGCCCGG ACGTGAGATC GCCGGCCACA GTCTGCGCCG CACGCTGGTG GTGATGCAGA ATTCCGGCAA CTTCGTCAGC GACAAGCGGC AACTGATCGA ACTCGGTGCC GCGCTCGCCT CGGGCGGTCC GGCCAGCCTG GTCGCCGAGC TGCGCGACGG CCGCCATATC CGGATCGATC TCCGGCGTCT GCCGAACGGC GGCTGGATCG CCAAGCACAG TGATGTCACC GATCACAAAC AGGCCGAGCA GCGCTTCGCC TATCTGGCGC TGCACGACGT CGCCACCGGT CTGCCGAACC GCGCTGCATT CAACGACCGC ATCGTGCAGA GCGTCGAGCA GGCGCGCCGC TTCGACGGCA GCTTCGCGGT GATCCGGCTC GGCATCGACC GCTTCAAGGA GATCAACGAC GTGTTCGGTC AGGCGGTCGG AGACGCGGTG CTGGCCGAAA TGGCCCGCCG TCTCGCCGAC ACCTGCCATT GGGGCTTCCT GGCGCGGCCC GGCGGCGACG AATTCTCGAT CGTCACGCCG CCCGATGCTG CGGCCGACTC GATCCAGGAC GTCTGCCGGC AACTGACGGA ACTGTGCGAC ACCGAGTTCG AGGTCGACGG CCATCGCGTC CGTGTCGGGG CGACCGCTGG CGTCAGCGTC TATCCGCGCG ACGGCGATGA CGCCGACACA CTGATTGCCC ATGCGGACGT CGCACTGTAT CGCGCTAAGA CCGAGCAGCG CGGCACGGTG TGTCTGTTCG AGCCGGCGAT GGATCTGCAG ATCCGCGAAA AGCGCGCCCT GCAGCGAGAA CTCGCAGTCG CGCTGGAGCA GCGGCAGTTC GAAATCCACT ACCAGCCGCA GGCCAGTACA TCCGGCGAGA TCGTCGGCTT CGAAGCGCTG CTGCGCTGGC GCCACCCGGT GCGCGGCATG GTGTCTCCGG CGCTGTTCGT GCCGCTCGCG GAAGAGACCG GCCAGATCGG TCCGATCGAC GAATGGGTGC TGCGCAGCGT CTGCGCCGAA GCGGCGTCCT GGGCCAAGCC GTTGGCGATC GCGGTCAACT TCTCGCCGCT CGACTTCCGC CGCTTCGATG TGCCGGCGCT GATCCTACAG ATTTTGCTTG AGACTGGACT CGAGGCGTCG CGCCTCGAGA TCGAAATCAC CGAAGGCGTG CTGATCGATG ATTTCGCCGG CGCGATCGCG ATCCTGCGCA AGATCAAGAA TCTCGGCGTG CGCGTCGCGA TGGATGATTT CGGCGCCGGC TACTCGTCGC TGTCGTATCT GCAGTCGTTT CCGTTCGACA AGATCAAGAT CGATCAGGCC TTCACTCGCA AGCTCGAGAC CAATCCGGAA TCGGCCGCGA TCGTCGAAGC GATCCTCAGC CTGGCGCGGA CGCTGAAACT GCCGGTGATC GCCGAAGGTG TCGAGACCGA AAAGCAGCTC GCGTTTCTGG CTCAAGCCGG CTGCGACGAG GTGCAGGGCT ATCTGATCGG CAGGCCGCAG CCGATAGCGC ATTACCGCGA TCTGACCACC GGCGAAACGG TCGCAGCGGC ACCGTTGGCG CAAGCCGTTT GA
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Protein sequence | MAELPSAPDA HTWGMITLAA VLCALGVVAA YGGLRSIRVS EGKGRRHWII ATCFASLSAV AAVVALALLA ASDAPLAPTI ALVLMIGSVI ATTGFASLAV WLSSIAGRRT QLTLAERDMV LDAILNDAAR GFCLFDAVGR LQLWNEAFLD IYGIPPGREI AGHSLRRTLV VMQNSGNFVS DKRQLIELGA ALASGGPASL VAELRDGRHI RIDLRRLPNG GWIAKHSDVT DHKQAEQRFA YLALHDVATG LPNRAAFNDR IVQSVEQARR FDGSFAVIRL GIDRFKEIND VFGQAVGDAV LAEMARRLAD TCHWGFLARP GGDEFSIVTP PDAAADSIQD VCRQLTELCD TEFEVDGHRV RVGATAGVSV YPRDGDDADT LIAHADVALY RAKTEQRGTV CLFEPAMDLQ IREKRALQRE LAVALEQRQF EIHYQPQAST SGEIVGFEAL LRWRHPVRGM VSPALFVPLA EETGQIGPID EWVLRSVCAE AASWAKPLAI AVNFSPLDFR RFDVPALILQ ILLETGLEAS RLEIEITEGV LIDDFAGAIA ILRKIKNLGV RVAMDDFGAG YSSLSYLQSF PFDKIKIDQA FTRKLETNPE SAAIVEAILS LARTLKLPVI AEGVETEKQL AFLAQAGCDE VQGYLIGRPQ PIAHYRDLTT GETVAAAPLA QAV
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