| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2436 |
|---|
| Symbol | |
|---|
| ID | 6410098 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 2626609 |
|---|
| End bp | 2628576 |
|---|
| Gene Length | 1968 bp |
|---|
| Protein Length | 655 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642712315 |
|---|
| Product | Carbamoyl-phosphate synthase L chain ATP-binding |
|---|
| Protein accession | YP_001991425 |
|---|
| Protein GI | 192290820 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00514] acetyl-CoA carboxylase, biotin carboxylase subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.930093 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAGC TGACGCCTTT CTCCAAGATC CTGATCGCCA ACCGCGGCGA GATCGCGCTG
CGGGTGATGC GCAGTGCCCG CCGGCTCGGC TACGGCGTGG TTGCGGTGTA TTCGGACACC
GACGCCGATG CCGCCCATGT CCGCGCTGCT GACGAAGCGG TGGCGATCGG TGGTGCGCTG
CCGTCGCAAT CGTACCTGAA CATTCCTGCA ATCATCGCGG CGGCGAAGAC CGCCGGCGCC
GATGCGGTGC ATCCCGGCTA CGGCTTCCTC GCCGAGAACG AGGACTTTGC CGCGGCGTGC
CGCGATGCGG GGCTTGTCTT TATCGGACCG TCCGCGGAAT CGATCGCCGC AATGGGCAAC
AAGGCCGGCG CCAAAGAGAT CATGCTGAAG GCCGGCGTGC CGTGCGTGCC GGGCTATCAG
GGCGAGGACC AGAGCGACGC TGCTATGGTC CGCGAAGCCG AGCGGATCGG CTTTCCGATC
ATGATCAAGG CGGTGGCGGG CGGCGGGGGC CGCGGCATGC GGCTGGTGAA GGACGCCGCC
GCGCTGCCCG ACGCGCTGCG CAGCGCGCGT TCGGAGGCGC AAAGTGCGTT CGGCGATCCG
ACCGTGATCC TGGAGCGCGC GATCCTACAG CCGCGCCACA TCGAGATCCA GGTGTTCGGC
GATCGCTACG GCGCCGCCAT TCATCTCGGG GAGCGCGACT GCTCGGTGCA GCGCCGGCAC
CAGAAGCTGA TCGAGGAGGC ACCGTCGCCG GCGGTGTCGG AAGCCTTGCG CGAGCAGATG
GGCACCGTGG CGGTGAACGC CGTCAAGGCG ATCGGTTACG AGGGCGCCGG CACGCTGGAG
TTCCTGCTCG ACGCCGAAGG CAACTTCTAC TTCATGGAGA TGAACACCCG GCTGCAGGTC
GAGCATCCGG TGACCGAGGC GATCACCGGG CTTGATCTGG TCGAGCTGCA ACTCCGGATC
GCCGCCGGCG AGCCGCTGCC GCTGCGCCAG GACGACGTGA CGTTCAAAGG CCACGCCATT
GAAGTGCGGT TGTGTTCGGA GGATGCCGAC CACGACTTCA TGCCGCAGTC GGGCCGCATG
GCGCTGTGGC GGATGCCGCC GGAGCTGCGC GTCGAGCACG CGCTGCAATC GGGCGCCGAG
ATCCCGCCGT ACTACGACTC GATGATCGCC AAGGTAATCG CGGTCGGCGC CAGCCGCGAC
GAGGCGCGGC GCAAGCTGAT CCATGGCCTC GACGGCACCA TCGCATTCGG CGTCACCACC
AATCGCGGCT TCCTGGCCGC CTGTCTGCGC CACAAGGCGT TCGCGGCCGG GGAGGCGACC
ACAGCGTTCA TCTCGCAGCA TCGCGACGAA CTGGTCCGGT CGCTACCGGA CGATGCGGTG
CCGGCAGCGG CGGTTGCCGC ATTGCTGCTC TACGTCACCG ATTCCTACGC GCCGCCGCAT
CGGCCCGGCC GCTCGCTGGC CGCGGTGTTT CCGACCCGGC TCAAGTTCGA ACTCGACGGG
GTGGAGCAGG CCTGCGAAGT GGTGCGTGAG CGCGACGGCA GCTACGTCGT CAGCCACGAG
GGGCAATCGA TCAGCTTCGT GATCGAGGAG CTGTCCGCTG GCAGCATCCG CTTCCAGGCC
CAGGGGCTCG GCGAGTCAGC AGTCTTCCAC CGTAATGGCC ACCGGTTGTT CGTGCAGCGG
CTCGGCGTGC AAAATAGCAT CGTCGATCTC ACCCGCGCGG CGCCGCAAAG CGCGGCGCGT
GGCGGCGGCG ACGGCAAGCT GCGCGCGGCG CTCAACGGCC GCGTTGTCGC GGTGCTGGTG
AAGGCCGGTG ACCGCGTCGA GGCCGGCCAG CCGGTGCTGA CTCTGGAAGC GATGAAGATG
GAGCACGTGC ACACGGCGCC TGGCTCTGGC ATCATCACGA TCGATGTCGC CGAAGGCGAG
CAGGTCACCG CCGGCCGCAT CGTCGCCGAG ATCGAGGCGG CGACTTGA
|
|---|
| Protein sequence | MLKLTPFSKI LIANRGEIAL RVMRSARRLG YGVVAVYSDT DADAAHVRAA DEAVAIGGAL
PSQSYLNIPA IIAAAKTAGA DAVHPGYGFL AENEDFAAAC RDAGLVFIGP SAESIAAMGN
KAGAKEIMLK AGVPCVPGYQ GEDQSDAAMV REAERIGFPI MIKAVAGGGG RGMRLVKDAA
ALPDALRSAR SEAQSAFGDP TVILERAILQ PRHIEIQVFG DRYGAAIHLG ERDCSVQRRH
QKLIEEAPSP AVSEALREQM GTVAVNAVKA IGYEGAGTLE FLLDAEGNFY FMEMNTRLQV
EHPVTEAITG LDLVELQLRI AAGEPLPLRQ DDVTFKGHAI EVRLCSEDAD HDFMPQSGRM
ALWRMPPELR VEHALQSGAE IPPYYDSMIA KVIAVGASRD EARRKLIHGL DGTIAFGVTT
NRGFLAACLR HKAFAAGEAT TAFISQHRDE LVRSLPDDAV PAAAVAALLL YVTDSYAPPH
RPGRSLAAVF PTRLKFELDG VEQACEVVRE RDGSYVVSHE GQSISFVIEE LSAGSIRFQA
QGLGESAVFH RNGHRLFVQR LGVQNSIVDL TRAAPQSAAR GGGDGKLRAA LNGRVVAVLV
KAGDRVEAGQ PVLTLEAMKM EHVHTAPGSG IITIDVAEGE QVTAGRIVAE IEAAT
|
|---|
| |