| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2352 |
|---|
| Symbol | |
|---|
| ID | 6410014 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 2540682 |
|---|
| End bp | 2542046 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642712232 |
|---|
| Product | periplasmic copper-binding |
|---|
| Protein accession | YP_001991342 |
|---|
| Protein GI | 192290737 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3420] Nitrous oxidase accessory protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATGA CGGTTCTATC GACGATCGTG GTTGTGGCGG CGCTGGTCAG CGTCGCCGCG
ACCGGCGCGG CCTCGGCCGC GCGGATCGAC GTCGTGCCGT CGTTGGATCT GCAGGTGGTG
CTGAACGGCG CCAGCGACGG CGACACCGTA ACGCTGGCGC CGGGGGATTA TCGCGGGCCG
ATCCGGATCG AGCGTAAGCT CGCCCTGATC GGCCAGCCCG GCGCTGCCGT GCTCGGGCAT
GGGCAGGGCA GCGTCATCAC CGTGGTGGCG CCCGACGTCA CGGTACGCGG CCTCGCGGTG
CGCGGCTCGG GCCGCGATCC GCAATCGATG GACTCCGGGA TCTTTCTGAC CCAGACCGCC
GAGCGGGCGC TGATCGAAGG CAATCGCCTC GAGGACAATT TGTTCGGCGT CAACGTCCAC
GGCGCCCGCG GATCGCGGGT CGCCCACAAC ACCATCGAGG GGCTGCGCGG CATCCGCCTG
AACGATGCAG GCAACGGCGT ACGGGTGTGG AATGCGCCGG ATGTGGTCGT CGATGGCAAC
ACCATCCGCT ATGGCCGCGA CGGCATCTTT TCGGTGACGA GCACCAAGGA CCGCTTCATC
AACAACCGGT TCGAGAAGGT GCGGTTCGCG GTGCACTACA TGTACACCAA CGACAGCGAG
ATCAGCGGCA ACGTTTCGGT CGGCAATCAC GGCGGCTACG CCATCATGTA TTCCAACCGG
CTGACGATCC TCGGCAACGT CTCCGAGCGT GACCGCGATT TCGGGCTGCT GCTCAACTAT
GCAAACTTCT CGCGGATCGA ACGCAACCGC GTCGTCGGCG GACCGCTGTC CGGGATCAGC
GCCGATTTCG AAGGCGTTGA CGCCGACAAG GGCATGATGC CGGTCGAGCG TGGCGCAGCC
GCGGCCGAGT TCGGCCCGAC CAAATGCGTC TTCATCTACA ACGCCAACAA GAACCGGTTT
CGCTACAACT GGTTCGAGAG CTGTGACATC GGCGTGCACT TCACCGCCGG TTCGGAAGGC
AACGAGATCG TGGGCAATGC GTTTATCGGC AATCGCAATC AGGTGAAATA CGTCGGCACC
CGCGACCTCG ACTGGTCGAA GGATGGCCGT GGCAATTATT GGAGCGACAA TCCGGCCTTC
GACCTCAACA ACGACGGCAT CGCTGATGCC GCGTATCGGC CGAACGATCT GGTCGACCGC
GTGCTGTGGA CCGCGCCGGC CGCCAAGGTG CTGATCAACA GCCCCGCCGT GCAGGTGTTG
CGCTGGGCGC AGAGCCAGTT TCCGGCGCTG TATCCGGGCG GGGTGGTCGA TACCCATCCG
TTGATCGCGC CGCCGGCGCT GCCGATGCCG GGAGTGGCAC CATGA
|
|---|
| Protein sequence | MAMTVLSTIV VVAALVSVAA TGAASAARID VVPSLDLQVV LNGASDGDTV TLAPGDYRGP
IRIERKLALI GQPGAAVLGH GQGSVITVVA PDVTVRGLAV RGSGRDPQSM DSGIFLTQTA
ERALIEGNRL EDNLFGVNVH GARGSRVAHN TIEGLRGIRL NDAGNGVRVW NAPDVVVDGN
TIRYGRDGIF SVTSTKDRFI NNRFEKVRFA VHYMYTNDSE ISGNVSVGNH GGYAIMYSNR
LTILGNVSER DRDFGLLLNY ANFSRIERNR VVGGPLSGIS ADFEGVDADK GMMPVERGAA
AAEFGPTKCV FIYNANKNRF RYNWFESCDI GVHFTAGSEG NEIVGNAFIG NRNQVKYVGT
RDLDWSKDGR GNYWSDNPAF DLNNDGIADA AYRPNDLVDR VLWTAPAAKV LINSPAVQVL
RWAQSQFPAL YPGGVVDTHP LIAPPALPMP GVAP
|
|---|
| |