| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2298 |
|---|
| Symbol | |
|---|
| ID | 6409959 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | + |
|---|
| Start bp | 2488205 |
|---|
| End bp | 2489476 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642712180 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_001991291 |
|---|
| Protein GI | 192290686 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTCCA GGATCGCCAC GCGGCTTGCG TGGGCGGTCG TGCTCTTCGT TGGCGTCTCG
CTGACCGGAG AAGCGCGCTC GCAAACTCTC ACCATGGGTG GTGCGCTTCA GCGCGCGCTC
GATGCCAGTC CTCGGCTGAC TGCCGCTGAG CGGGACGTCG GCATCGCGCG CGGCCAACGA
ATTCAAGCGG GTGCGTTCAT CAATCCGAAC GTTTCCTACG AACTGGACAA TTCGTTCGGT
TCTGGGCCTT ACCGCGGCAC CAGGTCGGCG GAGTCTACCC TGCAGATCAG TCAGATGTTC
GAGTTGTGGG GCAAGCGGGA TGCACGGATC GCGGCCGGTC AGGCCGGCTT CGATGCGGCT
GCCATCGGAC GCCAAGCAGT TCGTCTTGAA GTGCTTTCAG AAACGGCAAT TGCCTTCGTT
ACTGTACTCG GCCTTCAGCG CCGGATTCAG ATCCTGGATG AGCAGGTCCA AGCCATCGAC
AGGATCACGC CGCTCCTGAA GCGTCGGGTA GAAGCCGGTG CATCGTCTGT GGCCGAGACC
GGCAGGGCCG AGGTCGCATC CTCTTTGGTC AAGGCGGACC GCGAGCGAAC AAAGTCGGCG
CTTTCGAGCG CACGCCGCGA GCTCGCGATC TTGATGGGAG ACAGCGCGCC GAAGTTTGCG
GTGGTTTCCG GTCGCCTTGA TGTCAACGGG AAGCCGCCTT CGTTTCATTC GGTCATATCG
GCGATCGAAG CAAATCCGCA GTTGGTTCGT TGGAAGGCTG TCTACGCCCA ACGCAACGCC
GAACTGTTGC TGGCACGACT GCGGCCCTAT CCCGACGTGA CGGTCTCGGC CGGTCTGCGC
CACTACAACG AAACGGGCGA TAGCGCTGTC CGATTGTCGC TTTCGGTGCC GATTCCGGTG
TTCGACCAGA ACCAGGGCAA CATCCTATCC GCGCAAGAGA CGCTGGCGAG GACCGCCGCT
GAACGCCAAG GCAACCGCAA CACGCTGATC CTCGTGGCGG GACGTGCATA CGATTCGCTG
CAGGGATCGC TTCGCGAGCT TGCGATCCTG CGCGAAGTCG CAATTCCGAA GTCCAAGGAC
GCTGCGGATG CGATCTCCGA GGGGTACGGA CAGGGTCGAT ACACGCTACT CGAAGTGTTG
GATTCTCAGG CCAGTGTGGC GCAGGCGCGA CTTCGAGAAC AGGAGGCGCA GCAGAACTTT
CACATCGCTG TCGCAACCAT CGAAGGGCTG GTTGGCAATC CATTCGCGTT GGCGCGGGAG
AGCGCAAGAT GA
|
|---|
| Protein sequence | MLSRIATRLA WAVVLFVGVS LTGEARSQTL TMGGALQRAL DASPRLTAAE RDVGIARGQR
IQAGAFINPN VSYELDNSFG SGPYRGTRSA ESTLQISQMF ELWGKRDARI AAGQAGFDAA
AIGRQAVRLE VLSETAIAFV TVLGLQRRIQ ILDEQVQAID RITPLLKRRV EAGASSVAET
GRAEVASSLV KADRERTKSA LSSARRELAI LMGDSAPKFA VVSGRLDVNG KPPSFHSVIS
AIEANPQLVR WKAVYAQRNA ELLLARLRPY PDVTVSAGLR HYNETGDSAV RLSLSVPIPV
FDQNQGNILS AQETLARTAA ERQGNRNTLI LVAGRAYDSL QGSLRELAIL REVAIPKSKD
AADAISEGYG QGRYTLLEVL DSQASVAQAR LREQEAQQNF HIAVATIEGL VGNPFALARE
SAR
|
|---|
| |