Gene Rpal_2237 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_2237 
Symbol 
ID6409897 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp2425702 
End bp2428035 
Gene Length2334 bp 
Protein Length777 aa 
Translation table11 
GC content64% 
IMG OID642712121 
ProductTonB-dependent siderophore receptor 
Protein accessionYP_001991233 
Protein GI192290628 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID[TIGR01783] TonB-dependent siderophore receptor 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGGGGGCA CGTTGAAGGA CCTGAATTTC CCGGCAGCGG GAGCGCTGTC GTTTGTCTGC 
GCGTCGGTTC TCCTCATCTC CCATACGGCC GCTGCACAAG AAGCTCCTGC GCCGGCTTCC
GCTCCGAGTG CTTCAACTGA ATCTCCTACG AGTGCGACAG GACGATCACT ACCTGCCATC
GTCGTCGAGA CGTCGCGACG TCGTGCCGCG GCGATGTCCC CGCAGCGCAG GCCGTCGCAA
GTGTCGCGAT CAACAGCCAG CCGACGGGCC CCGAACCCGG CCAGCGCCGC AGCGCAGCCT
CGCCCGGTTT CGGCAGGCGC TCTGCAGGCG ACCTTGCCGG CTGGCTTTCC GGGAGATCAG
GTCGCGCGCG GTGCTGGCGT GGGTCTCCTC GGCAACCGTG ACGTGATGTC GACGCCGTTC
AGCCTTACCA GCTTCACGGA GAAGCTCATC CGGGATCAGC AGTCGCGAAC GCTGCTCGAC
GTGCTCGGCA ACGATCCCTC CGTGCGCTCC AACGTGCCGG CCTACAGCGG CATCCAGGGC
TTCTTCATTC GCGGCTTCCC GGTGTTCGCT CAGGACATCG CCTTCAACGG CCTGTATGGC
GTCGCCGACT CCTTCAATCC GGCGCTCGAG CCGATCGAAC GCGTCGAAGT GCAGCACGGC
CCGAGCACGA TGCTGAGCGG CATGCCGCCG TTCGGGACCA TCGGCGGGAC GATCAATCTG
ATCCCGAAGC GCGCCGGTGA CGTGCCGCTG ACGCGGTTCA CGACCGGATT CATCTCCAAC
GCGCAGAGCT ACAACGCCAT CGATGTCGGC CGGCGTTATG GCACCAATGG CGAGTGGGGC
ATCCGCTTCA ACGGCGCGTA TCAGTCCGGC AGCACGCCGA TCGACAACCA GAAACAAGAG
TACGGCGTCA CCTCGCTGGC GCTCGACTAC CGTGGCGAAC GCCTGCGGGT CGGCCTCGAC
CTCGGCTATC AGAAGGTCGA CTTCAATTCG CCGCTGCGCA ATCGCTCGGT GCTGCCGGGC
TTTCCGATCC CTCAAGCGCC GGATCTGCGG ATCAATCAGC AGCAGCCGTG GGAATATCGC
GACAGCAACA ACAAATCGGC CGCCATCCGT GCCGAGTACG ATCTGACCGA TCAACTCACC
GTCTATGCCG CCTACGGCCA TAGTGAATTT CATCAGGTCT ACTTCGGCGG TCTGCCGTCG
ATCATCAACG CGCGCGGCGA CTACCGCGAT ACGATCCAGC TCACCCCGTT CCAGACCTAC
AGCAACACCG GCGAAGTCGG CGTGCGCGGC CAGTTCGAAA CCGGACCGGT GAAGCACCGG
GTCGGCGTTG CGGCGTCCGG CCTCTGGCAG GATACCGGCC TGACCAACAT TCCGGTTGGT
GCGGCCATCA CCTCGAACAT CTACAATCCG GTGTACGCGC CGCCGCGCAG CGATGCCGGA
CTGCCGCGGA CCTCGCCGAC GACAGCGGAG CGCTTCAACC GCAGCATCGC CATCGCCGAT
ACGATGTCGA TCCTGAATGA TCGCGTCGAG CTGACGATCG GCGGTCGCTG GCAGGGCATC
GACGCCAAGA CGCTGAGCCC GGTGACGGGC CTGGTGACGT CCGATGCGCG CAACGATGCA
TTTTCTCCGG GCGCCGGTCT GGTCATCAAG CCGATCGAGC GGCTGTCGCT CTACGCCAAC
TACATCGAAG GTCTGACTTC GACGGCGCCG CCGACCAATG CGGTCAACCT CAACCAGAGC
TTCCCCGCGA CAGTATCGAA ACAGGTCGAG GCCGGCGCGA AATATGACTT TGGCCCGGTT
GGTGTGTCAG TTGCCGGCTT CGAGATCAAG CAGCCGAGCG GTTTCCTCGA TCCGACCACC
GGGGTGTTTG CGCTCAATGG CGAACAACGC AATCGTGGCG TCGAACTCAA CGTGTTCGGG
CAGCCGATCC AGGGATTGCG TGTTGTCGGC GGCGTGAGCT GGATCGAAGG CGTGCTGACG
AAAGCGTCGA ATCCCGCCTA CAACGGCAAT ACGGCGGTTG GTGTCCCGAC GATGCAGCTC
AATCTCTACG GCGAGTACGA CCTGCCGGGG CCCGCTCGCG GCGTAACCAT GACCGGCCGG
GTGATCCACA CCGCGTCGCA GTTCTACGAT CAGGCCAACA CCCAGAGCAT TCCAGCCTGG
ACCACGCTCG ATGTCGGCGT GCGCTACACC ACCAAGATCG ACCGAGTTCC TGTGACACTG
CGAGCCAACG TCCAGAACGT CACCGGCGAG AATTACTGGG CCACGACCGG TCGCGGCATT
CTCAGCCCCG GCGCGCCGCG GACCTATCTG GTCTCGGCGA GCTTCGACTT CTGA
 
Protein sequence
MGGTLKDLNF PAAGALSFVC ASVLLISHTA AAQEAPAPAS APSASTESPT SATGRSLPAI 
VVETSRRRAA AMSPQRRPSQ VSRSTASRRA PNPASAAAQP RPVSAGALQA TLPAGFPGDQ
VARGAGVGLL GNRDVMSTPF SLTSFTEKLI RDQQSRTLLD VLGNDPSVRS NVPAYSGIQG
FFIRGFPVFA QDIAFNGLYG VADSFNPALE PIERVEVQHG PSTMLSGMPP FGTIGGTINL
IPKRAGDVPL TRFTTGFISN AQSYNAIDVG RRYGTNGEWG IRFNGAYQSG STPIDNQKQE
YGVTSLALDY RGERLRVGLD LGYQKVDFNS PLRNRSVLPG FPIPQAPDLR INQQQPWEYR
DSNNKSAAIR AEYDLTDQLT VYAAYGHSEF HQVYFGGLPS IINARGDYRD TIQLTPFQTY
SNTGEVGVRG QFETGPVKHR VGVAASGLWQ DTGLTNIPVG AAITSNIYNP VYAPPRSDAG
LPRTSPTTAE RFNRSIAIAD TMSILNDRVE LTIGGRWQGI DAKTLSPVTG LVTSDARNDA
FSPGAGLVIK PIERLSLYAN YIEGLTSTAP PTNAVNLNQS FPATVSKQVE AGAKYDFGPV
GVSVAGFEIK QPSGFLDPTT GVFALNGEQR NRGVELNVFG QPIQGLRVVG GVSWIEGVLT
KASNPAYNGN TAVGVPTMQL NLYGEYDLPG PARGVTMTGR VIHTASQFYD QANTQSIPAW
TTLDVGVRYT TKIDRVPVTL RANVQNVTGE NYWATTGRGI LSPGAPRTYL VSASFDF