| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2189 |
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| Symbol | |
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| ID | 6409849 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 2371893 |
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| End bp | 2373734 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642712073 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001991185 |
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| Protein GI | 192290580 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.157569 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGCAC TGTTGATCCA CTACATGGCG CCGATCATGT TCGCGTCGTT GGTGGTATTT
CTGCTGCTGG GCTATCCGGT GGCGTTTTCG CTCGCCGCCA ACGGCCTTCT GTTCGCCTTC
CTCGGCATCG AACTCGGCCT GTTCCGTCCC GACTTCCTGC AGGCGCTACC CGATCGCGTC
TACGGGGTGA TGAACAACGA AACGCTGCTG GCGATTCCAT TCTTCACCTT CATGGGATTG
GTGCTGGAGA GATCCGGCAT GGCCGAGGAT CTGCTCGAGA CCATCGGGCA GTTGTTCGGC
TCGATCCGCG GCGGCATCGC CTATGCGGTG GTGTTTGTCG GCGCCCTGCT CGCCGCCACC
ACCGGCGTGG TCGCCGCGTC GGTGATCTCG ATGGGCCTGA TCTCGCTGCC GATCATGCTG
CGCTACGGCT ACGATCGCCG AGTCGCGACC GGCATCATCG CCGCCTCCGG CACGCTGGCC
CAGATTATCC CGCCGTCGCT GGTGCTGATC GTGATGGCCG ACCAGCTCGG TCGCTCGGTC
GGCGACATGT ACGAAGGCGC CTTCATCCCG GGCATCGTGC TGTCGCTGCT GTATGCGTTC
TACATCTTCC TGGTCACGAT CTTCGCCCCG AAGGCGGCGC CCGGCCTGCC GCTCGAAGCG
CAGACGCTGC GTGAGCCGGA GACCGCACGG CACCCGCTGA TCATGCCGCT GGCGGCGCTG
TCGGCCGGCG GTGCAGCCTA TCTGTTCGTC GTGCATTGGG GCGCGTTCGA CTGGAGCAAG
CCGGCGTTCG ACAAGGTCGG CCTGTCGCAG CTGGTGATGC AGGGCTTCTG GTTCGTGATC
CTGACGGCGG TGCTGTTCCG CCCGTTCATC GGCATCATCC GCACCATGAC GATGTCGCTG
TATCTGGTGG TGGTCGCCTC GACCGCCGCC GGCATCGTGG CGATGGGCTT CACCGACGTG
AAGTCGGGCG CCGACTACAT CGTGCTGACG ATGTCGGTCA CCGTGGCGTT GTCGTTCGTG
ATCGCGGTGC TGAACCGGCT GCTGCGGCTG AAGCTGCTGT CCAAGCTCGC CGAACAGGTC
GTGTTCGTGA TGGTGCCGCC GCTCGGCCTG ATCTTCCTGG TGCTCGGCAC CATCTTCATC
GGCGTCGCGA CGCCGACCGA AGGCGGTGCG ATGGGTGCCG CCGGCGCGAT GCTGTTGGCG
CTGATGAAGG GACGGCTGAG CTTCGACCTC ACCCGCCAGG CCACCGAGTC CACCGCCAAG
CTGACCGCCT TCGTGGTCAT GATCCTGGTC GGCGCCCGCG TGTTCTCGCT CACCTTCTAC
GGCGTCGACG GCCACCGCTG GGTCGAAGAA CTGCTGGTGT CGCTGCCCGG CGGCCAGCTC
GGCTTCCTGA TCTTCGTCAA CGCCTTCGTG TTCGTGCTGG CGTTCTTCCT CGACTTCTTC
GAACTCGCCT TCATCGTCAT CCCGCTGCTC GGGCCGGCGG CGGAGAAGCT CGGCATCGAT
CTGATCTGGT TCGGCGTGAT GCTCGGCGTC AACATGCAGA CCTCGTTCAT GCATCCGCCG
TTCGGCTTTG CCCTGTTCTA CCTGCGCTCG GTGGCGCCCA AGCTGCCGTA TATCGATCGC
GTCAGCGGCA AGCAGATGGC GCCGGTCACT ACGGGGCAGA TCTACTGGGG ATCGGTCCCG
TTCGTGATCA TCCAGTTGAT CATGGTCGCC CTGGTGATCG CCTTCCCCGG AATGGTGATG
CACTACAAGG GCGTCGCGGG GGACATCGAC CCGTCCAAGG TCAAGATCGA CATCCCGCAG
ATCGAGATGC CGCAGATCGA TCTCGGCCCG CCGAAGTTCT GA
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| Protein sequence | MTALLIHYMA PIMFASLVVF LLLGYPVAFS LAANGLLFAF LGIELGLFRP DFLQALPDRV
YGVMNNETLL AIPFFTFMGL VLERSGMAED LLETIGQLFG SIRGGIAYAV VFVGALLAAT
TGVVAASVIS MGLISLPIML RYGYDRRVAT GIIAASGTLA QIIPPSLVLI VMADQLGRSV
GDMYEGAFIP GIVLSLLYAF YIFLVTIFAP KAAPGLPLEA QTLREPETAR HPLIMPLAAL
SAGGAAYLFV VHWGAFDWSK PAFDKVGLSQ LVMQGFWFVI LTAVLFRPFI GIIRTMTMSL
YLVVVASTAA GIVAMGFTDV KSGADYIVLT MSVTVALSFV IAVLNRLLRL KLLSKLAEQV
VFVMVPPLGL IFLVLGTIFI GVATPTEGGA MGAAGAMLLA LMKGRLSFDL TRQATESTAK
LTAFVVMILV GARVFSLTFY GVDGHRWVEE LLVSLPGGQL GFLIFVNAFV FVLAFFLDFF
ELAFIVIPLL GPAAEKLGID LIWFGVMLGV NMQTSFMHPP FGFALFYLRS VAPKLPYIDR
VSGKQMAPVT TGQIYWGSVP FVIIQLIMVA LVIAFPGMVM HYKGVAGDID PSKVKIDIPQ
IEMPQIDLGP PKF
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