| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2188 |
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| Symbol | |
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| ID | 6409848 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2370613 |
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| End bp | 2371704 |
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| Gene Length | 1092 bp |
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| Protein Length | 363 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642712072 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_001991184 |
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| Protein GI | 192290579 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0149275 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACGTC GTGACTTTCT GAAAGTGTCA GCTACCGGCG CTGCGGCAGC GGCCGCGGTG
GCTTCCCCGG CGATCGCGCA ATCGTCGCCC GAGGTGAAGT GGCGGCTGAC CTCCAGCTTC
CCGAAGTCGC TCGATACCAT CTATGGCGGC GCCGAGTATC TGGCGAAGCA GGTCGCCGAG
ATGACCGACA ACAAGTTCCA GATCCAGGTG TTCGCGGCGG GTGAAGTCGT CCCCGGCCTG
CAGGCGCTGG ATGCCACGTC CAACGGCACC GTCGAGATGT GCCATACCGT GTCGTACTAC
TACGTCGGCA AGGACCCGAC TTTCGCGGTG TTCGCGTCGG TCCCGTTCGG CCTCAACGCC
CGTCAGCAGA ACTCCTGGCT GTATCAGGGC GGCGGCAACG AGCTCGCCAA CGAATTCTAC
AAGAAGTACG GCCTGGTCGG CTTCCCCTGC GGCAACACCG GCACCCAGAT GGGCGGCTGG
TTCCGTAAGG AGATCAAGAC CGTTGCCGAC ATGAGCGGCC TGAAGATGCG CATCGGCGGC
ATTGCCGGTC AGGTGCTGCA GAAGGTCGGC GTGGTGCCGC AGCAGATCGC CGGCGGCGAC
ATCTATCCGG CGCTGGAAAA GGGCACCATC GACGCCGCCG AGTGGGTCGG TCCGTACGAC
GACGAAAAGC TCGGCTTCCA GAAGGTCGCG AAGTACTACT ACTATCCGGG CTTCTGGGAA
GGCGGTCCGA CCGTGCACGC CTTCACCAAC CTCGAGAAGT TCAACCAGCT GCCGAAGAAC
TATCAGGCGA TCCTCGCCAA CGCGGCGGTG AACACCAACA CCTGGATGAA CGCGCGTTAC
GACATGCTCA ACCCCACCGC GCTGAAGCGG CTGGTGGCCG GTGGCACGCA GCTGCGCCCG
TTCTCGAACG AAATCCTGGA CGCCTGCCTC AAGGCCACCA ACGAGCTGTG GGGCGAAATC
TCGGCGAAGA ACCCGGACTT CAAGAAGGCG ATCGACGCCA TGCAGACGTA TCGCTCCGAC
CAGTACCTGT GGTGGCAGGT CGCGGAGTAC ACCTTCGACA GCTTCATGAT CCGCTCGCGC
ACCCGCGGCT GA
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| Protein sequence | MKRRDFLKVS ATGAAAAAAV ASPAIAQSSP EVKWRLTSSF PKSLDTIYGG AEYLAKQVAE
MTDNKFQIQV FAAGEVVPGL QALDATSNGT VEMCHTVSYY YVGKDPTFAV FASVPFGLNA
RQQNSWLYQG GGNELANEFY KKYGLVGFPC GNTGTQMGGW FRKEIKTVAD MSGLKMRIGG
IAGQVLQKVG VVPQQIAGGD IYPALEKGTI DAAEWVGPYD DEKLGFQKVA KYYYYPGFWE
GGPTVHAFTN LEKFNQLPKN YQAILANAAV NTNTWMNARY DMLNPTALKR LVAGGTQLRP
FSNEILDACL KATNELWGEI SAKNPDFKKA IDAMQTYRSD QYLWWQVAEY TFDSFMIRSR
TRG
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