| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2180 |
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| Symbol | |
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| ID | 6409840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2363576 |
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| End bp | 2364568 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642712064 |
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| Product | tRNA-dihydrouridine synthase A |
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| Protein accession | YP_001991176 |
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| Protein GI | 192290571 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family
[TIGR00742] tRNA dihydrouridine synthase A |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGCCCC ATCAGCCACA TCGCTTCTCC GTCGCGCCGA TGATGGAATG GACCGACAGT
CATTGTCGCG TCTTCCATCG GCTGCTGACC CGGCGCGGGC TGCTCTACAC CGAGATGGTC
ACCACTGGCG CTGTAATCCA CGGTGATCGG CAGCGGCTGC TCGGCTTCGA TGCGAGTGAG
CACCCGGTGG CGCTGCAGCT CGGCGGCTCC AATCCGAATG ACCTCGCGAC CTCGGCGAAG
ATCGGTGAGG ACTTCGGCTA CGACGAGATC AACATCAACG TCGGCTGCCC GTCGGATCGG
GTGAAGGAGG GCCGGTTCGG CGCCTGCCTG ATGGCGGAGC CCGAGCTGGT TGCCGAAGGC
GTCGCCGCGA TGGAGCGCGC GGTCGCCGTG CCGGTGACGG TGAAGTGCCG GATCGGGATC
GACGATCAGG ATCCCGAAGT CGCGCTCGAC GCACTGGCGC GGGCGGTGGT CGCAGCCGGC
GCCGACGCGC TGATCGTGCA CGCCCGCAAG GCGTGGCTGA ACGGGCTGTC GCCGAAAGAG
AACCGCCACA TCCCGCCGCT CGATTACGAT CGGGTGTATC GGCTGAAGCA GGCGATGCCA
CAGGTGCCGA TCATCATCAA CGGCGGCATC GGCAGCATCG CGGAAGCCAA GCGGCATCTC
GAGCACGTCG ACGGCGTAAT GCTCGGCCGC GCCGCCTATC AGGAGCCGTG GCGGCTTCTC
GAGGTCGATC CCGAGCTGTA CGGCGAACCG GCGCCCTATC CCTCGATGAA GGAGGCGCTC
GAAGCGCTGA TCCCGTATAT CGAGCGACAG CTTGCGCAGG GCCTGCGGCT GCACGCGATC
ACCCGCCACG TCATCGGCGC CTATCAGGGC GTCCCCGGCG CGCGCGCCTT CCGCCGCTAT
CTGTCCGAAT TCGGCGTCAA ACCCGATGCC GACGCCAGCG TGCTGTTGAA GGCGATGGTC
GCGGTGACGG AGCGGGCGAC GGAAGCTGCC TGA
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| Protein sequence | MQPHQPHRFS VAPMMEWTDS HCRVFHRLLT RRGLLYTEMV TTGAVIHGDR QRLLGFDASE
HPVALQLGGS NPNDLATSAK IGEDFGYDEI NINVGCPSDR VKEGRFGACL MAEPELVAEG
VAAMERAVAV PVTVKCRIGI DDQDPEVALD ALARAVVAAG ADALIVHARK AWLNGLSPKE
NRHIPPLDYD RVYRLKQAMP QVPIIINGGI GSIAEAKRHL EHVDGVMLGR AAYQEPWRLL
EVDPELYGEP APYPSMKEAL EALIPYIERQ LAQGLRLHAI TRHVIGAYQG VPGARAFRRY
LSEFGVKPDA DASVLLKAMV AVTERATEAA
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