Gene Rpal_2165 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_2165 
Symbol 
ID6409825 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp2343280 
End bp2343966 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content66% 
IMG OID642712049 
Producttranscriptional regulator, TetR family 
Protein accessionYP_001991161 
Protein GI192290556 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.483923 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTAAAC CCAAACAGAC GCCTGCAAAA AAGCTGACCA GCAATGCGAC GCAGCGTTCC 
AAGCGGGTCA CGCGCGCGCG CGGACCGAGC CCTGACAAGA CCGCGCACAC CAAAGCGAGC 
ATCGTGCGGG CGGCACTTGC CGAATTCCTC GACAAGGGGT TCGCGGATTC AACGATCGCG 
GGTGTGGCGC AGCGCGCCGG CGTCGCCAAG GGCACGCCAT ATCGTTACTT CGCCACCAAG 
GAAGCGCTGT TCGCCGGCGT GGTGCAGCAG GAACTGGTCG GCGCCCTCGG CGAAATCCTG 
GAGGAACGGC GCGGGCGCGA CGAGAGCGTG CAGGCGTTCC TGCGCCGCAC GCTGCTGATC 
GCGCTCGGCG AGATCGAGCG CAAGGGGCGG GCGGCGATCG CGCGGTTGGT GATCGTCGAG 
GGCGTGCGGT TTCCCGCGCT GGTGGAGATC TATCGCCGCG AGATGTTCGA TCCGGTGCTC 
GACCAGATCA AGCGTCTGGC GCCGGTGGCG CGCCGCCGCG GCGAGTTGCC CGATGACCGC 
CTGATCCGCC ACCCGCATCT TTTGATCGCG CCGGTGTGGA TGGGCATTCT CAACAACCAG 
CTGATCGACC GCGAGCACCC GATCGACATT GCCCGACTGT TCGAGGCGCA GCTGGAATTG 
ATGTTTTCCG GGGAGGCGCA GCGGTGA
 
Protein sequence
MPKPKQTPAK KLTSNATQRS KRVTRARGPS PDKTAHTKAS IVRAALAEFL DKGFADSTIA 
GVAQRAGVAK GTPYRYFATK EALFAGVVQQ ELVGALGEIL EERRGRDESV QAFLRRTLLI 
ALGEIERKGR AAIARLVIVE GVRFPALVEI YRREMFDPVL DQIKRLAPVA RRRGELPDDR 
LIRHPHLLIA PVWMGILNNQ LIDREHPIDI ARLFEAQLEL MFSGEAQR