Gene Rpal_2147 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_2147 
Symbol 
ID6409807 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp2320493 
End bp2323897 
Gene Length3405 bp 
Protein Length1134 aa 
Translation table11 
GC content67% 
IMG OID642712031 
Productouter membrane autotransporter barrel domain protein 
Protein accessionYP_001991143 
Protein GI192290538 
COG category[S] Function unknown 
COG ID[COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain 
TIGRFAM ID[TIGR01414] outer membrane autotransporter barrel domain 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAGCGG TGCTGTATGC GGCAGAGTCG CCTTCGAAAT CGAAGTCGGT CGCCAGGTCT 
GTCTTGCCGC CTGAATTGCA GGCGAAGTTC TCCGACGCGA TGCGGCAGGG CGAGCGCGCG
CTGATCGCTC AGGCTTACGA CAGCACGTAT CGCGATCCCG GGCTGCGCGA CGCGGTGGTG
CGCCACGTGT CTACACTGGC ACCGACCGCG CTGCGCGACG TCACCACCGC CGCCGATCTC
GGCGTGCTGA TCTCCGGCCA TCGGATGGTG CTCGCGCCGA ATGCCGCGCA GGTGCTGGCG
ACCCGCACCG CCTCGGCTTC GGGACTGACC GCGTCGTCGT ATCAGAACGT CGCGATGGCG
GTGAACAACT CGCCGAACCT GCCGAACCCG ATGCCATCGA GGACCGAGCA GACCTGGAAC
CTGGCTATGA TCGGCGCCCA GGGCGCCTAT AACCGCGGCT TCACCGGCGC CGGCGTCACC
GTCACGGTGG CGGATACCGG CTTCGACACC ACCAATGCAG GTCTCGTCAA CAAGCTGCGC
ACGAACCTCG GCAAGAACTA CATGGTCGAG ATCGGCAAGG CGTTCGATCC GAACGATCTC
TCGCCGGAGA GCGCACAGAA AACTGACATC CATGGTTCGC ACGTCGCCGG CATTATCGCG
GCGGAGAAGT TCGACAATGT CGATGCGCAC GGCGTCGCCT ACGATGCCAG CATCATTCCG
CTGCGCGCGA TCGCCGAGAA AGGCTACACC ACTTACGGGA ACGTCGACTC CTCCGCGCTG
GCACTGAACT ACTTCGCCGG CCTGAGCGGG ACGATGGTCT ATAACGCCAG CTACGGTCCG
AACTCCGACG GTCTCACCAA TCTGAAGCTA TGGACCGTCG GAAACATCGA CGACGAGGCG
AATGCCGCGT TCAATGTCCT CAAGGCCGGC AAGATCATCG TCGCTGCCGC CGGCAACGAC
CGCGCCGACA ATCCGATCGC CGCCCGCAAT GCCAACGGCC TCGCGCTGCT GCCGTTCTTC
AATCCGGCGC ACGCCGCGCT CGGTGTCTAT GACGATCAGG GACAGCAGCT CGACGGATCT
GCCCTTCAAC ATCAGCAGGG ACAGATCATT TCGGTGATGT CGGTGGGCAT CACCAAGGCG
GCTGCGTCCT ATTCGAATCT CTGCGGCGTG ACCGCGAGCT GGTGCGTGGC CGCGCCCGGT
GGCGATGATG CAACGGGCGC GCTGGTTTAT TCCACCGTGC CGGTGAACAC CTACGGCTTC
GCGCAAGGCA CCTCGATGGC AGCGCCGACG GTGTCGGGCG CGATCGCGGT GCTGATCCAA
GCTAACCCGA GCTACAACGC GCAGGACCTG TCGCGCCTGT TGTTCTCGAC CACCGAAGAT
CTCGGCGCGC CCGGCGTCGA TGCCGTGTTC GGCTATGGCT TGATCCGGCT CGATCGTGCC
ACTGATGGTC CGACCACGCT CGCTGCTAAC ACGGCGGTGT CGGTGGTCGC TGACCAGACC
ACCTATTGGA GCCGGCTGCT CACCACCGAT GGTGATTTCT CCAAGGTCGG CACCGGCATT
CTGAGCATCT CGGGCCGCAC CAACGCCGGC GGCAACGTGT TCGCCCAGCT CGGCACGCTG
GCCGTCGACG GCACGCTGAC GATGTCGGCC GGCCATCGCC TCGAAGTGGC GCAGCCCGCA
ACCCTGGCCG GCTTCGGCAC GATCGCCGGC GACACGGTGA TCGCGGGTAC GCTGTCGCCG
GGCAAGATGG CCAATATCGG CGACCTCGTG AGCAACAACG TGGTGCCGGC CGGCACGGTG
CTGAACGGCA ACTCGGTCGG CTCGCTGACC TTCAATGGCA ACGTTACGCT GACCTCGACC
GCGACCACCC GGATCGACAT CGACGGCTCG CTGATCGTGC CCGGCGGCCC TGGCACCTAC
GACAAGATTT ACGTCACCGG CGCCGGCAAT GTGTTCTACG CGGCCGGCAC GCTGACCCCG
GTGCTGCGCG GCAGCGTCGG CACCGTCAGC AACTACACGC CGGCGATCGG CACCGAGTTC
GCCTTCGTGC AGGCGACCGA CGGCGCCAGC ACCGCCGGCA GCTTCTCCAA GCTGGTGCAG
CCGACCTCGG GGCTGCCAGC CAACGGCCGC TTTGACCTGA TCTACAACCC GACGTCGATC
ACGCTGGTGG TGACGCCGTC GAGCTTCAGC CAGCTCGCCG ATGCCGATAA GCTCGGCCCC
ACGCAGCGGT CGATCGCCGG CATCCTCGAC AAGGATCGCG CCGCCTCGGG CGAGATGCCG
ACCGCCAACG AGAAGGCGCT GTATGACGCG CTGTACAAGC TCAACTCCGA GGCTGAGTTC
GACAAGGCGC TGAATCAGCT GTCCGGCCCC GGCCAGCCGG CGATGGCGAG CGCGCCGCTG
CAGGCTTTCA CCGGCTTCCT CGGCGCGATC GGCGATCGCC AGGACATGCT GACGTCCGGC
AGCGAGATCG GCCAGAACGG CACCGCGCAA TCGTTCGCGA TGTCCTATGC GGGCCGCAAC
ACGATGAGCG CCGGGACCAA TGCGGCGATG AACGCGTTCG CCAGTATCTC GCCGGCCGAG
CGGGTGCAGG ACGGCTGGTC GGTGTGGGGC CAGGGCTTCG GCCGCAACAG CCGGGTCGGC
GACAGCGGCG ATCTGTCGGG CTCGAAGGCG GTCAGCGCCG GCTTCGCGGT CGGCGTCGAT
CGCCGGTTCT CCAACAGCTT CAACGCCGGC GGTGCATTCG GCTATACGCG CACCACGGCG
ACCAGCACCG ACATGCAGGG CACCGTCGAT ACCTATGCGG GCGCTGCCTA TGCGAGCTGG
ACGCCGGGCG CCGCCGTGCT CGACTTCCGG ATCGCGGCCG GTCCCAGCCA AATGGCGACC
AGCCGCCAGA TCCTGCTGTC GCCGACCAGC CTGCAGGGCA GTGCCAACGG CGTCGGCGTC
GGCACCACGT TCGAGGCCGG CTATCGGTTC GCGATGGGGC ACGACGTGAC GCTGAAGCCG
TTCGTCGGCA TGACTTGGCA GGGCTTCCGC CGCGACGCCT ACAGCGAAAG CCAGCTGCCG
ATCGGCCTCG TCTATGCGGC CCGGACCTAT GACAAGCTGA CCTCCACGGT CGGCGCGGCG
GTGAGCGCGC GGCTGCGCAC CACCGACGGC ACCACGCTGG CGCCGGAGCT GAAGGTCGGC
TGGGGCTACG ATCTGCGCGA CAGCACGCTG GTCAGCGAGG CCGCGCTGCT CGACGAAGCG
TTCCTGGTCG ATGCGGCGCA GCCCGGCCGC AACGCGGCTC TGGTCAGCGC CAAGCTGTCA
GGCTGGCGCA CCGAGACGTT CCGGATGTTC GCCGCCTACA CCGGCGAATA TCGCAGCAAC
GCCACCAGCC ACCAGGTCTC GGCCGGCGCC CGCGTCAACT GGTAA
 
Protein sequence
MSAVLYAAES PSKSKSVARS VLPPELQAKF SDAMRQGERA LIAQAYDSTY RDPGLRDAVV 
RHVSTLAPTA LRDVTTAADL GVLISGHRMV LAPNAAQVLA TRTASASGLT ASSYQNVAMA
VNNSPNLPNP MPSRTEQTWN LAMIGAQGAY NRGFTGAGVT VTVADTGFDT TNAGLVNKLR
TNLGKNYMVE IGKAFDPNDL SPESAQKTDI HGSHVAGIIA AEKFDNVDAH GVAYDASIIP
LRAIAEKGYT TYGNVDSSAL ALNYFAGLSG TMVYNASYGP NSDGLTNLKL WTVGNIDDEA
NAAFNVLKAG KIIVAAAGND RADNPIAARN ANGLALLPFF NPAHAALGVY DDQGQQLDGS
ALQHQQGQII SVMSVGITKA AASYSNLCGV TASWCVAAPG GDDATGALVY STVPVNTYGF
AQGTSMAAPT VSGAIAVLIQ ANPSYNAQDL SRLLFSTTED LGAPGVDAVF GYGLIRLDRA
TDGPTTLAAN TAVSVVADQT TYWSRLLTTD GDFSKVGTGI LSISGRTNAG GNVFAQLGTL
AVDGTLTMSA GHRLEVAQPA TLAGFGTIAG DTVIAGTLSP GKMANIGDLV SNNVVPAGTV
LNGNSVGSLT FNGNVTLTST ATTRIDIDGS LIVPGGPGTY DKIYVTGAGN VFYAAGTLTP
VLRGSVGTVS NYTPAIGTEF AFVQATDGAS TAGSFSKLVQ PTSGLPANGR FDLIYNPTSI
TLVVTPSSFS QLADADKLGP TQRSIAGILD KDRAASGEMP TANEKALYDA LYKLNSEAEF
DKALNQLSGP GQPAMASAPL QAFTGFLGAI GDRQDMLTSG SEIGQNGTAQ SFAMSYAGRN
TMSAGTNAAM NAFASISPAE RVQDGWSVWG QGFGRNSRVG DSGDLSGSKA VSAGFAVGVD
RRFSNSFNAG GAFGYTRTTA TSTDMQGTVD TYAGAAYASW TPGAAVLDFR IAAGPSQMAT
SRQILLSPTS LQGSANGVGV GTTFEAGYRF AMGHDVTLKP FVGMTWQGFR RDAYSESQLP
IGLVYAARTY DKLTSTVGAA VSARLRTTDG TTLAPELKVG WGYDLRDSTL VSEAALLDEA
FLVDAAQPGR NAALVSAKLS GWRTETFRMF AAYTGEYRSN ATSHQVSAGA RVNW