Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_2147 |
Symbol | |
ID | 6409807 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 2320493 |
End bp | 2323897 |
Gene Length | 3405 bp |
Protein Length | 1134 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642712031 |
Product | outer membrane autotransporter barrel domain protein |
Protein accession | YP_001991143 |
Protein GI | 192290538 |
COG category | [S] Function unknown |
COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAGCGG TGCTGTATGC GGCAGAGTCG CCTTCGAAAT CGAAGTCGGT CGCCAGGTCT GTCTTGCCGC CTGAATTGCA GGCGAAGTTC TCCGACGCGA TGCGGCAGGG CGAGCGCGCG CTGATCGCTC AGGCTTACGA CAGCACGTAT CGCGATCCCG GGCTGCGCGA CGCGGTGGTG CGCCACGTGT CTACACTGGC ACCGACCGCG CTGCGCGACG TCACCACCGC CGCCGATCTC GGCGTGCTGA TCTCCGGCCA TCGGATGGTG CTCGCGCCGA ATGCCGCGCA GGTGCTGGCG ACCCGCACCG CCTCGGCTTC GGGACTGACC GCGTCGTCGT ATCAGAACGT CGCGATGGCG GTGAACAACT CGCCGAACCT GCCGAACCCG ATGCCATCGA GGACCGAGCA GACCTGGAAC CTGGCTATGA TCGGCGCCCA GGGCGCCTAT AACCGCGGCT TCACCGGCGC CGGCGTCACC GTCACGGTGG CGGATACCGG CTTCGACACC ACCAATGCAG GTCTCGTCAA CAAGCTGCGC ACGAACCTCG GCAAGAACTA CATGGTCGAG ATCGGCAAGG CGTTCGATCC GAACGATCTC TCGCCGGAGA GCGCACAGAA AACTGACATC CATGGTTCGC ACGTCGCCGG CATTATCGCG GCGGAGAAGT TCGACAATGT CGATGCGCAC GGCGTCGCCT ACGATGCCAG CATCATTCCG CTGCGCGCGA TCGCCGAGAA AGGCTACACC ACTTACGGGA ACGTCGACTC CTCCGCGCTG GCACTGAACT ACTTCGCCGG CCTGAGCGGG ACGATGGTCT ATAACGCCAG CTACGGTCCG AACTCCGACG GTCTCACCAA TCTGAAGCTA TGGACCGTCG GAAACATCGA CGACGAGGCG AATGCCGCGT TCAATGTCCT CAAGGCCGGC AAGATCATCG TCGCTGCCGC CGGCAACGAC CGCGCCGACA ATCCGATCGC CGCCCGCAAT GCCAACGGCC TCGCGCTGCT GCCGTTCTTC AATCCGGCGC ACGCCGCGCT CGGTGTCTAT GACGATCAGG GACAGCAGCT CGACGGATCT GCCCTTCAAC ATCAGCAGGG ACAGATCATT TCGGTGATGT CGGTGGGCAT CACCAAGGCG GCTGCGTCCT ATTCGAATCT CTGCGGCGTG ACCGCGAGCT GGTGCGTGGC CGCGCCCGGT GGCGATGATG CAACGGGCGC GCTGGTTTAT TCCACCGTGC CGGTGAACAC CTACGGCTTC GCGCAAGGCA CCTCGATGGC AGCGCCGACG GTGTCGGGCG CGATCGCGGT GCTGATCCAA GCTAACCCGA GCTACAACGC GCAGGACCTG TCGCGCCTGT TGTTCTCGAC CACCGAAGAT CTCGGCGCGC CCGGCGTCGA TGCCGTGTTC GGCTATGGCT TGATCCGGCT CGATCGTGCC ACTGATGGTC CGACCACGCT CGCTGCTAAC ACGGCGGTGT CGGTGGTCGC TGACCAGACC ACCTATTGGA GCCGGCTGCT CACCACCGAT GGTGATTTCT CCAAGGTCGG CACCGGCATT CTGAGCATCT CGGGCCGCAC CAACGCCGGC GGCAACGTGT TCGCCCAGCT CGGCACGCTG GCCGTCGACG GCACGCTGAC GATGTCGGCC GGCCATCGCC TCGAAGTGGC GCAGCCCGCA ACCCTGGCCG GCTTCGGCAC GATCGCCGGC GACACGGTGA TCGCGGGTAC GCTGTCGCCG GGCAAGATGG CCAATATCGG CGACCTCGTG AGCAACAACG TGGTGCCGGC CGGCACGGTG CTGAACGGCA ACTCGGTCGG CTCGCTGACC TTCAATGGCA ACGTTACGCT GACCTCGACC GCGACCACCC GGATCGACAT CGACGGCTCG CTGATCGTGC CCGGCGGCCC TGGCACCTAC GACAAGATTT ACGTCACCGG CGCCGGCAAT GTGTTCTACG CGGCCGGCAC GCTGACCCCG GTGCTGCGCG GCAGCGTCGG CACCGTCAGC AACTACACGC CGGCGATCGG CACCGAGTTC GCCTTCGTGC AGGCGACCGA CGGCGCCAGC ACCGCCGGCA GCTTCTCCAA GCTGGTGCAG CCGACCTCGG GGCTGCCAGC CAACGGCCGC TTTGACCTGA TCTACAACCC GACGTCGATC ACGCTGGTGG TGACGCCGTC GAGCTTCAGC CAGCTCGCCG ATGCCGATAA GCTCGGCCCC ACGCAGCGGT CGATCGCCGG CATCCTCGAC AAGGATCGCG CCGCCTCGGG CGAGATGCCG ACCGCCAACG AGAAGGCGCT GTATGACGCG CTGTACAAGC TCAACTCCGA GGCTGAGTTC GACAAGGCGC TGAATCAGCT GTCCGGCCCC GGCCAGCCGG CGATGGCGAG CGCGCCGCTG CAGGCTTTCA CCGGCTTCCT CGGCGCGATC GGCGATCGCC AGGACATGCT GACGTCCGGC AGCGAGATCG GCCAGAACGG CACCGCGCAA TCGTTCGCGA TGTCCTATGC GGGCCGCAAC ACGATGAGCG CCGGGACCAA TGCGGCGATG AACGCGTTCG CCAGTATCTC GCCGGCCGAG CGGGTGCAGG ACGGCTGGTC GGTGTGGGGC CAGGGCTTCG GCCGCAACAG CCGGGTCGGC GACAGCGGCG ATCTGTCGGG CTCGAAGGCG GTCAGCGCCG GCTTCGCGGT CGGCGTCGAT CGCCGGTTCT CCAACAGCTT CAACGCCGGC GGTGCATTCG GCTATACGCG CACCACGGCG ACCAGCACCG ACATGCAGGG CACCGTCGAT ACCTATGCGG GCGCTGCCTA TGCGAGCTGG ACGCCGGGCG CCGCCGTGCT CGACTTCCGG ATCGCGGCCG GTCCCAGCCA AATGGCGACC AGCCGCCAGA TCCTGCTGTC GCCGACCAGC CTGCAGGGCA GTGCCAACGG CGTCGGCGTC GGCACCACGT TCGAGGCCGG CTATCGGTTC GCGATGGGGC ACGACGTGAC GCTGAAGCCG TTCGTCGGCA TGACTTGGCA GGGCTTCCGC CGCGACGCCT ACAGCGAAAG CCAGCTGCCG ATCGGCCTCG TCTATGCGGC CCGGACCTAT GACAAGCTGA CCTCCACGGT CGGCGCGGCG GTGAGCGCGC GGCTGCGCAC CACCGACGGC ACCACGCTGG CGCCGGAGCT GAAGGTCGGC TGGGGCTACG ATCTGCGCGA CAGCACGCTG GTCAGCGAGG CCGCGCTGCT CGACGAAGCG TTCCTGGTCG ATGCGGCGCA GCCCGGCCGC AACGCGGCTC TGGTCAGCGC CAAGCTGTCA GGCTGGCGCA CCGAGACGTT CCGGATGTTC GCCGCCTACA CCGGCGAATA TCGCAGCAAC GCCACCAGCC ACCAGGTCTC GGCCGGCGCC CGCGTCAACT GGTAA
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Protein sequence | MSAVLYAAES PSKSKSVARS VLPPELQAKF SDAMRQGERA LIAQAYDSTY RDPGLRDAVV RHVSTLAPTA LRDVTTAADL GVLISGHRMV LAPNAAQVLA TRTASASGLT ASSYQNVAMA VNNSPNLPNP MPSRTEQTWN LAMIGAQGAY NRGFTGAGVT VTVADTGFDT TNAGLVNKLR TNLGKNYMVE IGKAFDPNDL SPESAQKTDI HGSHVAGIIA AEKFDNVDAH GVAYDASIIP LRAIAEKGYT TYGNVDSSAL ALNYFAGLSG TMVYNASYGP NSDGLTNLKL WTVGNIDDEA NAAFNVLKAG KIIVAAAGND RADNPIAARN ANGLALLPFF NPAHAALGVY DDQGQQLDGS ALQHQQGQII SVMSVGITKA AASYSNLCGV TASWCVAAPG GDDATGALVY STVPVNTYGF AQGTSMAAPT VSGAIAVLIQ ANPSYNAQDL SRLLFSTTED LGAPGVDAVF GYGLIRLDRA TDGPTTLAAN TAVSVVADQT TYWSRLLTTD GDFSKVGTGI LSISGRTNAG GNVFAQLGTL AVDGTLTMSA GHRLEVAQPA TLAGFGTIAG DTVIAGTLSP GKMANIGDLV SNNVVPAGTV LNGNSVGSLT FNGNVTLTST ATTRIDIDGS LIVPGGPGTY DKIYVTGAGN VFYAAGTLTP VLRGSVGTVS NYTPAIGTEF AFVQATDGAS TAGSFSKLVQ PTSGLPANGR FDLIYNPTSI TLVVTPSSFS QLADADKLGP TQRSIAGILD KDRAASGEMP TANEKALYDA LYKLNSEAEF DKALNQLSGP GQPAMASAPL QAFTGFLGAI GDRQDMLTSG SEIGQNGTAQ SFAMSYAGRN TMSAGTNAAM NAFASISPAE RVQDGWSVWG QGFGRNSRVG DSGDLSGSKA VSAGFAVGVD RRFSNSFNAG GAFGYTRTTA TSTDMQGTVD TYAGAAYASW TPGAAVLDFR IAAGPSQMAT SRQILLSPTS LQGSANGVGV GTTFEAGYRF AMGHDVTLKP FVGMTWQGFR RDAYSESQLP IGLVYAARTY DKLTSTVGAA VSARLRTTDG TTLAPELKVG WGYDLRDSTL VSEAALLDEA FLVDAAQPGR NAALVSAKLS GWRTETFRMF AAYTGEYRSN ATSHQVSAGA RVNW
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