| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2132 |
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| Symbol | |
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| ID | 6409792 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2300853 |
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| End bp | 2302835 |
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| Gene Length | 1983 bp |
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| Protein Length | 660 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642712017 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_001991129 |
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| Protein GI | 192290524 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGCCG AGGCCGGGCA CTACGCACTG GTTCTGGCGC TGGCTCTGGC GCTGATCCAG
TCCACCGTTC CGCTGCTCGG CGCCCGGCTC AATGACGGCG CGCTGATGAA TGTGGCGCGC
TCGACCGCGC TGGTGCAGCT GTTGTTCGCC GGCCTGTCGT TCACCGCGCT GGTGTGGCTG
CACGTCACCT CCGACTTCTC GGTGGTGAAC GTGTACGAGA ACTCCCACTC GATGAAGCCG
CTGCTCTACA AGATCACCGG CGTGTGGGGG AACCACGAAG GCTCGATGCT GCTGTGGGTC
GCGATCCTGG CGCTGTTCGG CGGCCTGGTC GCGGCGTTCG GCAACAATTT GCCGCTGTCG
CTGCGCGCCC ACGTGTTGGC TGTTCAGGGC TGGGTCGCAA CCGCGTTCTA TCTGTTCATC
CTGATCACCT CGAACCCGTT CGCGCGGATT GCCAATGCGC CGGCCGAGGG CCGCGATCTC
AACCCGGTGC TGCAGGATAT CGGTCTCGCG GTGCATCCGC CGATGCTGTA CCTCGGCTAT
GTCGGGTTCT CGATTTCGTT CTCGTTCGCC GCCGCTGCGC TGATGGAAGG CCGGCTCGAC
GCCGCCTGGG CTCGCTGGGT GCGGCCGTGG ACACTGGTCG CCTGGATCTT CCTCACCCTC
GGCATCGCGA TGGGCTCGTA TTGGGCCTAC TACGAACTCG GCTGGGGTGG CTGGTGGTTC
TGGGACCCGG TCGAGAACGC CTCGCTGATG CCGTGGCTCG CCGGCACCGC GCTCTTGCAC
TCGGCGCTGG TGATGGAGAA GCGCAACGCG CTGAAGGTCT GGACCATCCT GCTGTCGATC
CTGACCTTCT CGCTGTCGCT GCTCGGCACC TTCCTGGTGC GCTCCGGCGT GCTCACCTCG
GTGCACGCCT TCGCCACCGA TCCGTCGCGC GGCGTGTTCA TCCTGATCAT CCTGTGCGTG
TTCATCGGCG GCAGCCTGAC GCTGTTTGCC TGGCGGGCCT CGTCGCTGAA GCAGGGCGGC
CTGTTCGCGC CGATCTCGCG CGAAGGCTCG CTGGTGCTGA ACAATCTGTT CCTCACCACC
GCCTGCGCCA CCGTGTTCGT CGGCACGCTG TATCCGCTGG CGCTGGAAGT GCTGACCGGC
GACAAGATCT CGGTCGGCGC GCCGTTCTTC AATCTCACCT TCGGCCCGCT GATGGTGCCG
CTGCTGGTCG CGGTGCCGTT CGGCCCGCTG TTGGCCTGGA AGCGCGGCGA TCTGGTCGGC
GCCGCGCAGC GGCTGATCGC CGCCGGCGTG GTGGCGCTGC TGGCGGTCGC CTTCGTATAT
GCCTGGGTCC ATGGCGGCGC GGTGCTGGCG CCGCTGGCGA TCGGGCTTGC GGTGTTCGTC
ATCATCGGCG CGCTGGTTGA CATCGCCGAG CGCATTGCGC TGTTCCGCGG TCCGCTGTCG
ATCTCGCTGC GCCGCGCCTC CGGCCTGCCG CGCTCGGCCT GGGGCACGAT GTTCGCCCAT
GCGGCGCTCG GCGTGACGCT GATCGGCATC GTCTGCGAGA CCACCTGGAA CAGCGAGTAC
ATCGCCGCGA TGAAGCCGGG CGACAGCACC AAGCTCGCCG GCTACGAGTT CAAGTTCGAA
GGCGCCAATC AGCGCCAGGG GCCGAACTAT CGCGAGTTGC TGACGCAGTT CACGGTGACC
GAGAACGGCC GGCTGGTCGG CGGCATGGCG CCGTCGAAGC GCAGCTTCAT CACCCGCGGC
TCCTCGACCA CCGAGGCGGC GCTGCTGACC CGCGGCTTCA GCCAGCTCTA CATCTCGCTC
GGCGATCTCA ACGACCAGGG CGCGGTGACG GTGCGGATCT ATCACAAGCC GATGGTGCTG
CTGATCTGGT TCGGCCCGAT CCTGATGGCG CTCGGCGGCC TGCTGTCGCT GTCCGATCGC
CGCTTGCGGG TCGGCGCGCC GAAGCTCGCC AAGGCGCCGC GCGTGCTGCA GCCGGCCGAG
TAG
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| Protein sequence | MIAEAGHYAL VLALALALIQ STVPLLGARL NDGALMNVAR STALVQLLFA GLSFTALVWL
HVTSDFSVVN VYENSHSMKP LLYKITGVWG NHEGSMLLWV AILALFGGLV AAFGNNLPLS
LRAHVLAVQG WVATAFYLFI LITSNPFARI ANAPAEGRDL NPVLQDIGLA VHPPMLYLGY
VGFSISFSFA AAALMEGRLD AAWARWVRPW TLVAWIFLTL GIAMGSYWAY YELGWGGWWF
WDPVENASLM PWLAGTALLH SALVMEKRNA LKVWTILLSI LTFSLSLLGT FLVRSGVLTS
VHAFATDPSR GVFILIILCV FIGGSLTLFA WRASSLKQGG LFAPISREGS LVLNNLFLTT
ACATVFVGTL YPLALEVLTG DKISVGAPFF NLTFGPLMVP LLVAVPFGPL LAWKRGDLVG
AAQRLIAAGV VALLAVAFVY AWVHGGAVLA PLAIGLAVFV IIGALVDIAE RIALFRGPLS
ISLRRASGLP RSAWGTMFAH AALGVTLIGI VCETTWNSEY IAAMKPGDST KLAGYEFKFE
GANQRQGPNY RELLTQFTVT ENGRLVGGMA PSKRSFITRG SSTTEAALLT RGFSQLYISL
GDLNDQGAVT VRIYHKPMVL LIWFGPILMA LGGLLSLSDR RLRVGAPKLA KAPRVLQPAE
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