Gene Rpal_2122 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_2122 
Symbol 
ID6409782 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp2287789 
End bp2291661 
Gene Length3873 bp 
Protein Length1290 aa 
Translation table11 
GC content71% 
IMG OID642712007 
Productgene transfer agent (GTA) orfg15, like protein 
Protein accessionYP_001991119 
Protein GI192290514 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0264351 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTGCTC TCGTTCTTTC CGTCGCCGGC GCTGCGGCCG GCGCGCTGTT CGGTCCTGTC 
GGCGCGATCG CCGGGCGGAT CGCGGGCGCG CTGATCGGCA ATGCGCTGGA TCAGTCGTTG
TTCGGCGGCA GCAGCGATAC GTCGCGCGCG GTCGAGGGAC CGCGGCTCGC CGATCTCGAC
GTGATGGCCT CGACCGAAGG CGCGCCGATC CCGCGGGTCT ATGGCCGCGC CCGGCTCGCC
GGCCAGGTGA TCTGGGCGAC CGCACTCGAG GAGGTGATCA GCGTCGAGCA GAGCACCACC
GGCGGCGGAG GCGGCGGCAA GGGCTTCGGT GGCGGCGGGG GCGGGCAGAC CACGACCACC
ACCACGACCT ACAGTTACTT CGCCAATCTC GCGGTCGGGC TGTGCGAAGG GCCGATCGGC
CGGGTGGCGC GAATCTGGGC CGACGGCAAG CCGCTCGATC TGTCCGGCCT CAACATTCGC
GTCCATCGCG GCACCGAGGA TCAGGCGCCG GACGGGCTGA TCGTCGCCAA GGAAGGCGCC
GGCAATACGC CGGCCTATCG CGGGCTGGCT TACGTTGTGT TCGAGCGGCT GCCGCTCGCC
GACTTCGGCA ACCGGATTCC GCAATTGTCG TTCGAGATCG TGCGGCCGAT CGGCCTGCTC
GAACAGATCA CCCGCGCGGT GACGCTGATC CCCGGCACCA CCGAATTCGG CTACGAGCCG
GCGACGCGGG TGCAGATGCT CGGCGCCGGC AGCGCCGCGC CGGAGAACCG CCATGTCGCT
TACGCGCCGT CCGATGTGCT CGCCTCGCTC GACGATCTGC AGGGCGTCTG CCCCGGGCTG
CAGCGCGTCG CGCTGGTGGT GGCGTGGTTC GGCACCGATC TGCGCGCGCA GGCCTGCACG
GTGGAGCCTG GCGTCGAGCG CCGTGACAAG AGGCTCGATC AGGGCTCTTG GTCGGTGGCC
GGTGCGACCC GCGCCAGCGC ACGCCTGATC TCGCAGGTCG GCGGGCGTCC GGCTTATGGC
GGCACGCCGT CCGACGACAC CGTGGTGCAT CTGATCGGCG AACTGAAGGC GCGCGGGCTG
AAGATCACGT TCTATCCGTT CGTGGTGATG GACGTGCCGG CCGGTAACGG CCTTCCCAAT
CCTTGGACCG CCGCGGCGCC GCAGCCGCCT TATCCCTGGC GCGGCCGCAT CACCTGCGAT
CCGGCGCCGG GCGTGCCGGG CTCGCCGCAA GGCACTGCGA CGGCCGCCGC GCAGGTGGCG
CAGTTCTTCG CCGGGGGCGT CTGGAACTAT CGCCGCATGA TCCTGCACTA CGCGCAGCTC
TGCGCGAGTG CCGGCGGGGT CGATGCGTTC CTGATTGGTT CAGAGCTGCG GTCGCTGACG
CGGGTGCGGT CGGCGCCCGG CGTGTATTCG GCGGTGCAGC AGCTCGTCGC GCTCGCTGGC
GACGTCAAGG CGATCGTCGG CGGCGGAACG CTGGTCACGT ACGGGGCCGA CTGGACCGAA
TACGGCGCCG ACGTGGTGAC GCCGGACGCG TCCGAGATCC GGTTTCCGCT CGACCCGCTG
TGGGCGTCGC CCGCGATCGG TGCGATCGGA ATCGATTACT ACGCGCCGCT CGCCGACTGG
CGCGACGATG CCGGCCATCT GGATTCGGCG CTCGCCGCTA CCAGCTACGA CCGCGGCTAT
CTCGCCGGCA ATGTCGAAGC CGGGGAAGGC TACGACTGGT ACTACCCGGA CGCGGCGGCG
CGCGCCGCGC AGGCACGGGT GCCGATCACC GACGGGCTCG GCAAGCCGTG GATCCACCGC
GTCAAGGATA TCCGCGGCTT CTGGTCGCAG CCGCATCACG AACGGGTCGG CGGCACTGAG
TTCGCGTCTC CGACCGGCTG GGTGCCGATG AGCAAGCCGG TGTGGCTGAC CGAGGTCGGC
TGCCCGGCGG TCGACAAGGG CGCCAATCAG CCGAGCGTGT TTCCCGATCC GAAATCGAGT
GAGAATTTTG CTCCGTATTT CTCCAGCGGC GAGCGCGACG ACCTGATCCA GCGCCGCTAT
CTCGAATGCC TGATCACGGC GTTCAGCGCC GAGGCCCGCA ATCCGGTGTC GCCGCTGTAT
GGCGGACGGA TGATCGATCT GTCGGCGATC CATCTGTGGA CCTGGGACGC GCGGCCCTAT
CCGGTGTTTC CCGCCGCCGA TGAGGTGTGG AGCGATGCGC CGAACTGGAC CAGCGGGCAC
TGGCTGACCG GCCGGCTCGG CGGCGCGCCG CTCGATGCGC TGATTGCCGC GCTGCTCGCC
GATGCCGGTG TCGGCGGAGT CGACAGCAGC GATCTGCGCG AAGGCTGCGA CGGCTATGTG
GTCGACCGGC CGATGTCGCC GCGGGCGATG ATCGAGCCGC TGGCGCTGGC CTACAGTTTC
GATGCGGTTG CGGCCGGCGG CACGCTGCGC TTCGTGCAGC GTGGCGGCGC GCCGGTGATC
GACCTCAACG AAGACGATCT GGTGCTGCCC GACAAGGGCG CGCCGTGGCG GCTGACGCGG
GCGCAGGAGA CCGAGCTGCC GCGCGAAACC GCGATCGCCT ACAGCGATGC GCTGGCCGAT
TATCGCCGCG CTGCCGCTGC CTCACGCCGG CTGGTCGGCG GCGCGGCGCG GATGGTGAAG
GCCGATCTCG CGGTCGTCAC CAACGATGCG GCAGCAACGC GGCGCGCCGA GATCGTGCTG
CAGGATCTGT GGGCCGGCCG CGAGCGCGCC AGCTTCGCGC TGGGCTTGCG ACATCTGCCG
CTCGCGCCCG GCGACGTCGT GGCGCTGACG CTCGCGGGCC GGCGACGGCT GTTCGAGATC
GACGAGGTGG TCGACACGAA TACGCGGCAG GTGACGGCGC GCAGCATCGA TCCCGACGTG
TTCGCGCTGC CGCAGCGGAT GCCGCGGCCG GCCGTGGCGA CGATCCCGGC CGCGCTCGGC
CCGGCCGAGG TGATCGCGCT CGATCTGCCG GTGATCGACG CAGCCGAGCC TGACGTGTTG
ACGCGGCTCG CGGTGTTCGC CAATCCGTGG CCGGTGGCAG AGACCATCTA CGTCTCGGCC
GATGGCGCGA GCTATCAGCC GCTGGCGCGC GCGCCGGCGC GGACGATCAT CGGCACCACG
CTCGATCCGC TGCCGCGCGG GCCGCTGGCG CGGTGGGATC GCGTCACCGC GTTTCGCGTC
CAGATCAGCG GCGGGGCGCT GGCGTCGCTG TCGGCCCTGC GTGTGCTGGC CGGCGGCAAC
GCGGCGGCGG TGCGGACGCC GGACGGCGGC TGGGAGATCC TGCAATTCGC GAGCGCCGAA
CTGATCGACG GCAACATTTA TCGCTTGTCG CATCTACTGC GCGGGCAGGC CGGCAGCGAT
GCCGCGATAC GCGATCTCGT GCCGGCCGGC GCGCGGTTCG TGTTGCTCGA TACCCATCTG
GTGCCGATCG CGCGTGGGCT GTCGGCGCTC GGCCGCAGCC TGCGCCTGCG CGTCGTCGCA
AGCGGGCGCA GCCATGACGA TCCGAGCGCG GTCGACCTGA CCGTGACGCC GGGGCTGGCC
GCGTTGCGGC CGCTGGCGCC GGTGCATTTG TCGGCGCGCC GCGCCGCAGA CGGCGTTCGT
GTCGGCTGGA TTCGCCGGAC CCGGATCGAC GGCGACGGCT GGGGCGCCGA GGTGCCGCTC
GGCGAAGACA GCGAAGCCTA TGCGGTCGAC ATTCTCGGGA GCGGCGGCGC GGTGGTGCGG
TCGATCCAAA CTAGCGTGCC GCTAGCGCTG TACGCCGCCG CTGATGAGCT TGCGGATTTC
GGCGCGGCGC AAGCCTCGCT CACCGTCCGC GTCGCGCAGA CTTCCGCCAC CGTCGGACCG
GGCTTCGCCG CCACCGCCAC CTTCGCGTTG TGA
 
Protein sequence
MAALVLSVAG AAAGALFGPV GAIAGRIAGA LIGNALDQSL FGGSSDTSRA VEGPRLADLD 
VMASTEGAPI PRVYGRARLA GQVIWATALE EVISVEQSTT GGGGGGKGFG GGGGGQTTTT
TTTYSYFANL AVGLCEGPIG RVARIWADGK PLDLSGLNIR VHRGTEDQAP DGLIVAKEGA
GNTPAYRGLA YVVFERLPLA DFGNRIPQLS FEIVRPIGLL EQITRAVTLI PGTTEFGYEP
ATRVQMLGAG SAAPENRHVA YAPSDVLASL DDLQGVCPGL QRVALVVAWF GTDLRAQACT
VEPGVERRDK RLDQGSWSVA GATRASARLI SQVGGRPAYG GTPSDDTVVH LIGELKARGL
KITFYPFVVM DVPAGNGLPN PWTAAAPQPP YPWRGRITCD PAPGVPGSPQ GTATAAAQVA
QFFAGGVWNY RRMILHYAQL CASAGGVDAF LIGSELRSLT RVRSAPGVYS AVQQLVALAG
DVKAIVGGGT LVTYGADWTE YGADVVTPDA SEIRFPLDPL WASPAIGAIG IDYYAPLADW
RDDAGHLDSA LAATSYDRGY LAGNVEAGEG YDWYYPDAAA RAAQARVPIT DGLGKPWIHR
VKDIRGFWSQ PHHERVGGTE FASPTGWVPM SKPVWLTEVG CPAVDKGANQ PSVFPDPKSS
ENFAPYFSSG ERDDLIQRRY LECLITAFSA EARNPVSPLY GGRMIDLSAI HLWTWDARPY
PVFPAADEVW SDAPNWTSGH WLTGRLGGAP LDALIAALLA DAGVGGVDSS DLREGCDGYV
VDRPMSPRAM IEPLALAYSF DAVAAGGTLR FVQRGGAPVI DLNEDDLVLP DKGAPWRLTR
AQETELPRET AIAYSDALAD YRRAAAASRR LVGGAARMVK ADLAVVTNDA AATRRAEIVL
QDLWAGRERA SFALGLRHLP LAPGDVVALT LAGRRRLFEI DEVVDTNTRQ VTARSIDPDV
FALPQRMPRP AVATIPAALG PAEVIALDLP VIDAAEPDVL TRLAVFANPW PVAETIYVSA
DGASYQPLAR APARTIIGTT LDPLPRGPLA RWDRVTAFRV QISGGALASL SALRVLAGGN
AAAVRTPDGG WEILQFASAE LIDGNIYRLS HLLRGQAGSD AAIRDLVPAG ARFVLLDTHL
VPIARGLSAL GRSLRLRVVA SGRSHDDPSA VDLTVTPGLA ALRPLAPVHL SARRAADGVR
VGWIRRTRID GDGWGAEVPL GEDSEAYAVD ILGSGGAVVR SIQTSVPLAL YAAADELADF
GAAQASLTVR VAQTSATVGP GFAATATFAL