Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_2122 |
Symbol | |
ID | 6409782 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 2287789 |
End bp | 2291661 |
Gene Length | 3873 bp |
Protein Length | 1290 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 642712007 |
Product | gene transfer agent (GTA) orfg15, like protein |
Protein accession | YP_001991119 |
Protein GI | 192290514 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0264351 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTGCTC TCGTTCTTTC CGTCGCCGGC GCTGCGGCCG GCGCGCTGTT CGGTCCTGTC GGCGCGATCG CCGGGCGGAT CGCGGGCGCG CTGATCGGCA ATGCGCTGGA TCAGTCGTTG TTCGGCGGCA GCAGCGATAC GTCGCGCGCG GTCGAGGGAC CGCGGCTCGC CGATCTCGAC GTGATGGCCT CGACCGAAGG CGCGCCGATC CCGCGGGTCT ATGGCCGCGC CCGGCTCGCC GGCCAGGTGA TCTGGGCGAC CGCACTCGAG GAGGTGATCA GCGTCGAGCA GAGCACCACC GGCGGCGGAG GCGGCGGCAA GGGCTTCGGT GGCGGCGGGG GCGGGCAGAC CACGACCACC ACCACGACCT ACAGTTACTT CGCCAATCTC GCGGTCGGGC TGTGCGAAGG GCCGATCGGC CGGGTGGCGC GAATCTGGGC CGACGGCAAG CCGCTCGATC TGTCCGGCCT CAACATTCGC GTCCATCGCG GCACCGAGGA TCAGGCGCCG GACGGGCTGA TCGTCGCCAA GGAAGGCGCC GGCAATACGC CGGCCTATCG CGGGCTGGCT TACGTTGTGT TCGAGCGGCT GCCGCTCGCC GACTTCGGCA ACCGGATTCC GCAATTGTCG TTCGAGATCG TGCGGCCGAT CGGCCTGCTC GAACAGATCA CCCGCGCGGT GACGCTGATC CCCGGCACCA CCGAATTCGG CTACGAGCCG GCGACGCGGG TGCAGATGCT CGGCGCCGGC AGCGCCGCGC CGGAGAACCG CCATGTCGCT TACGCGCCGT CCGATGTGCT CGCCTCGCTC GACGATCTGC AGGGCGTCTG CCCCGGGCTG CAGCGCGTCG CGCTGGTGGT GGCGTGGTTC GGCACCGATC TGCGCGCGCA GGCCTGCACG GTGGAGCCTG GCGTCGAGCG CCGTGACAAG AGGCTCGATC AGGGCTCTTG GTCGGTGGCC GGTGCGACCC GCGCCAGCGC ACGCCTGATC TCGCAGGTCG GCGGGCGTCC GGCTTATGGC GGCACGCCGT CCGACGACAC CGTGGTGCAT CTGATCGGCG AACTGAAGGC GCGCGGGCTG AAGATCACGT TCTATCCGTT CGTGGTGATG GACGTGCCGG CCGGTAACGG CCTTCCCAAT CCTTGGACCG CCGCGGCGCC GCAGCCGCCT TATCCCTGGC GCGGCCGCAT CACCTGCGAT CCGGCGCCGG GCGTGCCGGG CTCGCCGCAA GGCACTGCGA CGGCCGCCGC GCAGGTGGCG CAGTTCTTCG CCGGGGGCGT CTGGAACTAT CGCCGCATGA TCCTGCACTA CGCGCAGCTC TGCGCGAGTG CCGGCGGGGT CGATGCGTTC CTGATTGGTT CAGAGCTGCG GTCGCTGACG CGGGTGCGGT CGGCGCCCGG CGTGTATTCG GCGGTGCAGC AGCTCGTCGC GCTCGCTGGC GACGTCAAGG CGATCGTCGG CGGCGGAACG CTGGTCACGT ACGGGGCCGA CTGGACCGAA TACGGCGCCG ACGTGGTGAC GCCGGACGCG TCCGAGATCC GGTTTCCGCT CGACCCGCTG TGGGCGTCGC CCGCGATCGG TGCGATCGGA ATCGATTACT ACGCGCCGCT CGCCGACTGG CGCGACGATG CCGGCCATCT GGATTCGGCG CTCGCCGCTA CCAGCTACGA CCGCGGCTAT CTCGCCGGCA ATGTCGAAGC CGGGGAAGGC TACGACTGGT ACTACCCGGA CGCGGCGGCG CGCGCCGCGC AGGCACGGGT GCCGATCACC GACGGGCTCG GCAAGCCGTG GATCCACCGC GTCAAGGATA TCCGCGGCTT CTGGTCGCAG CCGCATCACG AACGGGTCGG CGGCACTGAG TTCGCGTCTC CGACCGGCTG GGTGCCGATG AGCAAGCCGG TGTGGCTGAC CGAGGTCGGC TGCCCGGCGG TCGACAAGGG CGCCAATCAG CCGAGCGTGT TTCCCGATCC GAAATCGAGT GAGAATTTTG CTCCGTATTT CTCCAGCGGC GAGCGCGACG ACCTGATCCA GCGCCGCTAT CTCGAATGCC TGATCACGGC GTTCAGCGCC GAGGCCCGCA ATCCGGTGTC GCCGCTGTAT GGCGGACGGA TGATCGATCT GTCGGCGATC CATCTGTGGA CCTGGGACGC GCGGCCCTAT CCGGTGTTTC CCGCCGCCGA TGAGGTGTGG AGCGATGCGC CGAACTGGAC CAGCGGGCAC TGGCTGACCG GCCGGCTCGG CGGCGCGCCG CTCGATGCGC TGATTGCCGC GCTGCTCGCC GATGCCGGTG TCGGCGGAGT CGACAGCAGC GATCTGCGCG AAGGCTGCGA CGGCTATGTG GTCGACCGGC CGATGTCGCC GCGGGCGATG ATCGAGCCGC TGGCGCTGGC CTACAGTTTC GATGCGGTTG CGGCCGGCGG CACGCTGCGC TTCGTGCAGC GTGGCGGCGC GCCGGTGATC GACCTCAACG AAGACGATCT GGTGCTGCCC GACAAGGGCG CGCCGTGGCG GCTGACGCGG GCGCAGGAGA CCGAGCTGCC GCGCGAAACC GCGATCGCCT ACAGCGATGC GCTGGCCGAT TATCGCCGCG CTGCCGCTGC CTCACGCCGG CTGGTCGGCG GCGCGGCGCG GATGGTGAAG GCCGATCTCG CGGTCGTCAC CAACGATGCG GCAGCAACGC GGCGCGCCGA GATCGTGCTG CAGGATCTGT GGGCCGGCCG CGAGCGCGCC AGCTTCGCGC TGGGCTTGCG ACATCTGCCG CTCGCGCCCG GCGACGTCGT GGCGCTGACG CTCGCGGGCC GGCGACGGCT GTTCGAGATC GACGAGGTGG TCGACACGAA TACGCGGCAG GTGACGGCGC GCAGCATCGA TCCCGACGTG TTCGCGCTGC CGCAGCGGAT GCCGCGGCCG GCCGTGGCGA CGATCCCGGC CGCGCTCGGC CCGGCCGAGG TGATCGCGCT CGATCTGCCG GTGATCGACG CAGCCGAGCC TGACGTGTTG ACGCGGCTCG CGGTGTTCGC CAATCCGTGG CCGGTGGCAG AGACCATCTA CGTCTCGGCC GATGGCGCGA GCTATCAGCC GCTGGCGCGC GCGCCGGCGC GGACGATCAT CGGCACCACG CTCGATCCGC TGCCGCGCGG GCCGCTGGCG CGGTGGGATC GCGTCACCGC GTTTCGCGTC CAGATCAGCG GCGGGGCGCT GGCGTCGCTG TCGGCCCTGC GTGTGCTGGC CGGCGGCAAC GCGGCGGCGG TGCGGACGCC GGACGGCGGC TGGGAGATCC TGCAATTCGC GAGCGCCGAA CTGATCGACG GCAACATTTA TCGCTTGTCG CATCTACTGC GCGGGCAGGC CGGCAGCGAT GCCGCGATAC GCGATCTCGT GCCGGCCGGC GCGCGGTTCG TGTTGCTCGA TACCCATCTG GTGCCGATCG CGCGTGGGCT GTCGGCGCTC GGCCGCAGCC TGCGCCTGCG CGTCGTCGCA AGCGGGCGCA GCCATGACGA TCCGAGCGCG GTCGACCTGA CCGTGACGCC GGGGCTGGCC GCGTTGCGGC CGCTGGCGCC GGTGCATTTG TCGGCGCGCC GCGCCGCAGA CGGCGTTCGT GTCGGCTGGA TTCGCCGGAC CCGGATCGAC GGCGACGGCT GGGGCGCCGA GGTGCCGCTC GGCGAAGACA GCGAAGCCTA TGCGGTCGAC ATTCTCGGGA GCGGCGGCGC GGTGGTGCGG TCGATCCAAA CTAGCGTGCC GCTAGCGCTG TACGCCGCCG CTGATGAGCT TGCGGATTTC GGCGCGGCGC AAGCCTCGCT CACCGTCCGC GTCGCGCAGA CTTCCGCCAC CGTCGGACCG GGCTTCGCCG CCACCGCCAC CTTCGCGTTG TGA
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Protein sequence | MAALVLSVAG AAAGALFGPV GAIAGRIAGA LIGNALDQSL FGGSSDTSRA VEGPRLADLD VMASTEGAPI PRVYGRARLA GQVIWATALE EVISVEQSTT GGGGGGKGFG GGGGGQTTTT TTTYSYFANL AVGLCEGPIG RVARIWADGK PLDLSGLNIR VHRGTEDQAP DGLIVAKEGA GNTPAYRGLA YVVFERLPLA DFGNRIPQLS FEIVRPIGLL EQITRAVTLI PGTTEFGYEP ATRVQMLGAG SAAPENRHVA YAPSDVLASL DDLQGVCPGL QRVALVVAWF GTDLRAQACT VEPGVERRDK RLDQGSWSVA GATRASARLI SQVGGRPAYG GTPSDDTVVH LIGELKARGL KITFYPFVVM DVPAGNGLPN PWTAAAPQPP YPWRGRITCD PAPGVPGSPQ GTATAAAQVA QFFAGGVWNY RRMILHYAQL CASAGGVDAF LIGSELRSLT RVRSAPGVYS AVQQLVALAG DVKAIVGGGT LVTYGADWTE YGADVVTPDA SEIRFPLDPL WASPAIGAIG IDYYAPLADW RDDAGHLDSA LAATSYDRGY LAGNVEAGEG YDWYYPDAAA RAAQARVPIT DGLGKPWIHR VKDIRGFWSQ PHHERVGGTE FASPTGWVPM SKPVWLTEVG CPAVDKGANQ PSVFPDPKSS ENFAPYFSSG ERDDLIQRRY LECLITAFSA EARNPVSPLY GGRMIDLSAI HLWTWDARPY PVFPAADEVW SDAPNWTSGH WLTGRLGGAP LDALIAALLA DAGVGGVDSS DLREGCDGYV VDRPMSPRAM IEPLALAYSF DAVAAGGTLR FVQRGGAPVI DLNEDDLVLP DKGAPWRLTR AQETELPRET AIAYSDALAD YRRAAAASRR LVGGAARMVK ADLAVVTNDA AATRRAEIVL QDLWAGRERA SFALGLRHLP LAPGDVVALT LAGRRRLFEI DEVVDTNTRQ VTARSIDPDV FALPQRMPRP AVATIPAALG PAEVIALDLP VIDAAEPDVL TRLAVFANPW PVAETIYVSA DGASYQPLAR APARTIIGTT LDPLPRGPLA RWDRVTAFRV QISGGALASL SALRVLAGGN AAAVRTPDGG WEILQFASAE LIDGNIYRLS HLLRGQAGSD AAIRDLVPAG ARFVLLDTHL VPIARGLSAL GRSLRLRVVA SGRSHDDPSA VDLTVTPGLA ALRPLAPVHL SARRAADGVR VGWIRRTRID GDGWGAEVPL GEDSEAYAVD ILGSGGAVVR SIQTSVPLAL YAAADELADF GAAQASLTVR VAQTSATVGP GFAATATFAL
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