| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2116 |
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| Symbol | |
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| ID | 6409776 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | + |
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| Start bp | 2284533 |
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| End bp | 2284985 |
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| Gene Length | 453 bp |
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| Protein Length | 150 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 642712001 |
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| Product | phage cell wall peptidase, NlpC/P60 family |
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| Protein accession | YP_001991113 |
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| Protein GI | 192290508 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
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| TIGRFAM ID | [TIGR02219] putative phage cell wall peptidase, NlpC/P60 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.0732006 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAATCAGC CCATCGACCG CGACGCGCTG GTCGCCGAGG CGCGGAGCTG TATCGGCACA
AGCTATCGGC ATCAGGCCTC GGTGAAGGGC GTCGGCTGCG ATTGCCTCGG CCTGGTTCGC
GGGGTGTGGC GCGCCTGCCT CGGCGAGGAG CCGGAAGCGC CGCCGCCTTA CGCGCCGGAT
TGGGCCGAGG CCGGCGGCGA CGAGACGCTG GCGGCGGCAG CGCTGCGCCA TCTGGCGCCG
GTGCCGTGCG ATGCGTGCGA CCGAGGCGAC GTGCTGCTGT TCCGCTGGCG CGACGGCTGC
GTCGCCAAGC ACGCCGCGAT CGCCAGCTCG GCGACGACGA TGATCCACGC GCATGACGGC
GCGGCGGTGT GCGAGGTCGC GATCACGCCG TGGTGGCGGC GTCGGCTCGC CTATGCGTTC
ACGTTTCCCG GCGTTGCAGA TCCGCTGCGT TGA
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| Protein sequence | MNQPIDRDAL VAEARSCIGT SYRHQASVKG VGCDCLGLVR GVWRACLGEE PEAPPPYAPD
WAEAGGDETL AAAALRHLAP VPCDACDRGD VLLFRWRDGC VAKHAAIASS ATTMIHAHDG
AAVCEVAITP WWRRRLAYAF TFPGVADPLR
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