Gene Rpal_2112 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_2112 
Symbol 
ID6409772 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand+ 
Start bp2280218 
End bp2280811 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content71% 
IMG OID642711997 
Productgene transfer agent (GTA) like protein 
Protein accessionYP_001991109 
Protein GI192290504 
COG category[S] Function unknown 
COG ID[COG5281] Phage-related minor tail protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.00631991 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGGCA GCGGCACTGG CGAAGGCTGC GACTGTGCGT GCGTCGACGA CACCACGCAG 
AAGGTCGACC AGCTCACCAC CAAGACCCAG GCGCTGAGCA GCGAAGCCAA GGGCTTTGCG 
CGCGCGATGA CCTCGGCGTT CGCGCAGTCG GTCACCGGCG GCAAGCAGTT CGAGGACGTG 
CTGAAGTCGC TGGCGCTGAA GGTCTCGGAC CTCGCGCTGA AGGCGGCGCT GAAGCCGCTG 
ACCACCAGCC TCGCCACCGG CTTCGACAGC CTGTTCTCGG GGCTGTTCGG CGGCTCGCTC 
GTCAAGAACG CCGACGGCGC CATCAAGCCG TTCGCGGCCG GCGGCGTGAT CGGCACGCCG 
ACCTACTTCC CGATGCTCGG CGGCGGCGTC GGCCTCGCCG GTGAAGCGGG CCCCGAGGCA 
ATTCTGCCGT TGGCGCGCGG CGCCGACGGC CGGCTCGGCG TCGCCTCCAG CGGCGGCGCC 
ACCACCGTCA ACATCCAGAT CGCCACGCCC GACGCCGACA GCTTCCGCCG CTCCGAGACC 
TATCTGACCG GCCAGATCGC CCGTGCCGTC GCGCGCGGGC AGCGGGGCTT GTAG
 
Protein sequence
MTGSGTGEGC DCACVDDTTQ KVDQLTTKTQ ALSSEAKGFA RAMTSAFAQS VTGGKQFEDV 
LKSLALKVSD LALKAALKPL TTSLATGFDS LFSGLFGGSL VKNADGAIKP FAAGGVIGTP 
TYFPMLGGGV GLAGEAGPEA ILPLARGADG RLGVASSGGA TTVNIQIATP DADSFRRSET 
YLTGQIARAV ARGQRGL