| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_2085 |
|---|
| Symbol | |
|---|
| ID | 6409745 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris TIE-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011004 |
|---|
| Strand | - |
|---|
| Start bp | 2257576 |
|---|
| End bp | 2258643 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642711970 |
|---|
| Product | Choloylglycine hydrolase |
|---|
| Protein accession | YP_001991082 |
|---|
| Protein GI | 192290477 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3049] Penicillin V acylase and related amidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.251255 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCGGTT TCAAGCGACG TCTCCTCACC ACCTGCGCCG GCGCACTGGC CATCGCGGGA
TCGTTACTGC CGCCGGTCGC CGACGCCTGC ACCCGTCTAG TTTATCTCGG CGCCGACAAT
CAGGTGATCA CGGCGCGATC GATGGATTGG GCGCGCGACA TCGGCACCAA TCTCTGGATC
TTTCCACGCG GCATCAAGCG CTCCGGCGAG GCCGGCCCCA ATTCGGCACA GTGGACCGCA
CGCTACGGCA GCGTGATCGC GTCGGCCTAT GACGTCGCGA CTTCGGACGG AATCAACGAG
GCCGGGCTGG TCGCCAACGT GCTGTGGCTG GCGGAATCGC AATATCCGCC GTTCGACGGC
TCCAAGCCGG GGCTGGCGCT GTCGCTGTGG CCTCAATATG CGCTCGACAA TTTCGCCACC
GTCGCCGAAG CGGTCGAGGC GCTGGCGAAG GAACCGTTCA CGGTCGTCAC AGACAAGATG
CCCGGTGAGC AGCGCCTTGC CACTGTGCAC CTGGCGCTGT CGGACGCCTC CGGTGACAGC
GCCATCATCG AATACATCGA CGGCAAGCAG GTGATCCACC ACGGCCGGCA ATACCAAGTG
ATGACCAATT CGCCGACCTT CGATCAGCAG CTCGCGCTGA ATTCGTACTG GCAGCAGATC
GGTGGCACGG TGATGCTCCC AGGCACCAAC CGCGCGGCCG ATCGTTTCGC GCGGGCCTCG
TTCTATGTCG GCGCAATTCC TAAAACGCCC GACCCGGTGG AATCGATCGC CGCCGCGTTC
AGCGTGATCC GCAACGCGTC GGTGCCGTTC GGCATCTCGA CGCCAGATCA GCCGAACATC
TCGTCGACCC GCTGGCGCAG CGTCGCCGAC CACAAGCGCA AACTGTACTT CTTCGAATCC
GCGCTGACGC CCAACGTGTT CTGGGTCGAT CTCACCAAGA TCGAGTTCGC GGCCGACAAG
GGCGTGGTGA AAAAGCTCGA CCTCGGCCCC GGCCAGAGCA ACGTCTTCTC GGGCGAGGTG
CACGATCGCT TCAAGCCGGC GGAGCCGTTC AAGTTTCAGG GACTGTGA
|
|---|
| Protein sequence | MIGFKRRLLT TCAGALAIAG SLLPPVADAC TRLVYLGADN QVITARSMDW ARDIGTNLWI
FPRGIKRSGE AGPNSAQWTA RYGSVIASAY DVATSDGINE AGLVANVLWL AESQYPPFDG
SKPGLALSLW PQYALDNFAT VAEAVEALAK EPFTVVTDKM PGEQRLATVH LALSDASGDS
AIIEYIDGKQ VIHHGRQYQV MTNSPTFDQQ LALNSYWQQI GGTVMLPGTN RAADRFARAS
FYVGAIPKTP DPVESIAAAF SVIRNASVPF GISTPDQPNI SSTRWRSVAD HKRKLYFFES
ALTPNVFWVD LTKIEFAADK GVVKKLDLGP GQSNVFSGEV HDRFKPAEPF KFQGL
|
|---|
| |